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The genomic history and global expansion of domestic donkeys

Todd, Evelyn T.; Tonasso-Calvière, Laure; Chauvey, Loreleï; Schiavinato, Stéphanie; Fages, Antoine; Seguin-Orlando, Andaine; Clavel, Pierre

Donkeys transformed human history as essential beasts of burden for long-distance movement, especially across semi-arid and upland environments. They remain insufficiently studied despite globally expanding and providing key support to low- to middle-income communities. To elucidate their domestication history, we constructed a comprehensive genome panel of 207 modern and 31 ancient donkeys, as well as 15 wild ...


Pervasive hybridization with local wild relatives in Western European grapevine...

Freitas, Sara; Gazda, Małgorzata A; Rebelo, Miguel Â; Muñoz-Pajares, Antonio J; Vila-Viçosa, Carlos; Muñoz-Mérida, Antonio; Gonçalves, Luís M

Grapevine (Vitis vinifera L.) diversity richness results from a complex domestication history over multiple historical periods. Here, we used whole-genome resequencing to elucidate different aspects of its recent evolutionary history. Our results support a model in which a central domestication event in grapevine was followed by postdomestication hybridization with local wild genotypes, leading to the presence ...


Pervasive hybridization with local wild relatives in Western European grapevine...

Freitas, Sara; Gazda, Małgorzata A.; Rebelo, Miguel Â.; Muñoz-Pajares, Antonio J.; Vila-Viçosa, Carlos; Muñoz-Mérida, Antonio; Gonçalves, Luís M.

Grapevine (Vitis vinifera L.) diversity richness results from a complex domestication history over multiple historical periods. Here, we used whole-genome resequencing to elucidate different aspects of its recent evolutionary history. Our results support a model in which a central domestication event in grapevine was followed by postdomestication hybridization with local wild genotypes, leading to the presence ...

Date: 2021   |   Origin: Repositório da UTAD

Pervasive hybridization with local wild relatives in Western European grapevine...

Freitas, Sara; Gazda, Małgorzata A.; Rebelo, Miguel Â.; Muñoz-Pajares, Antonio J.; Vila-Viçosa, Carlos; Muñoz-Mérida, Antonio; Gonçalves, Luís M.

Grapevine (Vitis vinifera L.) diversity richness results from a complex domestication history over multiple historical periods. Here, we used whole-genome resequencing to elucidate different aspects of its recent evolutionary history. Our results support a model in which a central domestication event in grapevine was followed by postdomestication hybridization with local wild genotypes, leading to the presence ...


Pervasive hybridization with local wild relatives in Western European grapevine...

Freitas, Sara; Gazda, Malgorzata A.; Rebelo, Miguel A.; Muñoz-Pajares, Antonio J.; Vila-Viçosa, Carlos; Muñoz-Mérida, Antonio; Gonçalves, Luís M.

Grapevine (Vitis vinifera L.) diversity richness results from a complex domestication history over multiple historical periods. Here, we used whole-genome resequencing to elucidate different aspects of its recent evolutionary history. Our results support a model in which a central domestication event in grapevine was followed by postdomestication hybridization with local wild genotypes, leading to the presence ...



Males and females contribute unequally to offspring genetic diversity in the po...

Pérez-González, Javier; Costa, Vânia; Santos, Pedro; Slate, Jon; Carranza, Juan; Fernández-Llario, Pedro; Zsolnai, Attila; Monteiro, Nuno M

The maintenance of genetic diversity across generations depends on both the number of reproducing males and females. Variance in reproductive success, multiple paternity and litter size can all affect the relative contributions of male and female parents to genetic variation of progeny. The mating system of the wild boar (Sus scrofa) has been described as polygynous, although evidence of multiple paternity in l...


How immunogenetically different are domestic pigs from wild boars: a perspectiv...

Chen, Shanyuan; Gomes, Rui; Costa, Vânia; Santos, Pedro; Charneca, Rui; Zhang, Ya-ping; Liu, Xue-hong; Wang, Shao-qing; Bento, Pedro; Nunes, José

The coexistence of wild boars and domestic pigs across Eurasia makes it feasible to conduct comparative genetic or genomic analyses for addressing how genetically different a domestic species is from its wild ancestor. To test whether there are differences in patterns of genetic variability between wild and domestic pigs at immunity-related genes and to detect outlier loci putatively under selection that may un...


Novel coding genetic variants of the GBP1 gene in wild and domestic pigs (Sus s...

Chen, Shanyuan; Gomes, Rui; Costa, Vânia; Rocha, Isabel; Zsolnai, Attila; Anton, István; Charneca, Rui; Santos, Pedro; Nunes, José Luis; Buzgó, József

The interferon-induced guanylate-binding protein 1 gene (GBP1) plays an important role in host defense against viral, bacterial and protozoan infections. To explore novel genetic variants in this gene, we re-sequenced a 587-bp fragment spanning the exon 2 of the GBP1 gene in a sample panel consisting of 34 wild boars and 59 local domestic pigs from three geographic regions (China, Iberian Peninsula, and Central...


Microsatellite markers for identification and parentage analysis in the Europea...

Costa, Vânia; Pérez-González, Javier; Santos, Pedro; Fernández-Llario, Pedro; Carranza, Juan; Zsolnai, Attila; Anton, István; Buzgó, József

Background The wild boar (Sus scrofa) is among the most widespread mammal species throughout the old world. Presently, studies concerning microsatellites in domestic pigs and wild boars have been carried out in order to investigate domestication, social behavior and general diversity patterns among either populations or breeds. The purpose of the current study is to develop a robust set of microsatellites marke...


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