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Insomnia and nightmare profiles during the COVID-19 pandemic in Portugal: chara...

Gonçalves, M; Henriques, A; Costa, AR; Correia, D; Severo, M; Lucas, R; Barros, H; Santos, AC; Ribeiro, AI; Rocha, A; Lopes, C; Correia, D; Ramos, E

Objective/background: To describe and characterize insomnia symptoms and nightmare profiles in Portugal during the first six weeks of a national lockdown due to COVID-19. Patients/methods: An open cohort study was conducted to collect information of the general population during the first wave of SARS-CoV-2/COVID-19 pandemic in Portugal. We analyzed data from 5011 participants (≥16 years) who answered a weekly ...


Machine learning methods to predict attrition in a population-based cohort of v...

Teixeira, R; Rodrigues, C; Moreira, C; Barros, H; Camacho, R

The timely identification of cohort participants at higher risk for attrition is important to earlier interventions and efficient use of research resources. Machine learning may have advantages over the conventional approaches to improve discrimination by analysing complex interactions among predictors. We developed predictive models of attrition applying a conventional regression model and different machine le...


Shedding light on the african enigma: In vitro testing of homo sapiens-helicoba...

Cavadas, B; Leite, M; Pedro, N; Magalhães, AC; Melo, J; Correia, M; Máximo, V; Camacho, R; Fonseca, NA; Figueiredo, C; Pereira, L

The continuous characterization of genome-wide diversity in population and case- cohort samples, allied to the development of new algorithms, are shedding light on host ancestry impact and selection events on various infectious diseases. Especially interesting are the longstanding associations between humans and certain bacteria, such as the case of Helicobacter pylori, which could have been strong drivers of a...


Gastric microbiome diversities in gastric cancer patients from europe and asia ...

Cavadas, B; Camacho, R; Ferreira, JC; Ferreira, RM; Figueiredo, C; Brazma, A; Fonseca, NA; Pereira, L

The human gastrointestinal tract harbors approximately 100 trillion microorganisms with different microbial compositions across geographic locations. In this work, we used RNASeq data from stomach samples of non-disease (164 individuals from European ancestry) and gastric cancer patients (137 from Europe and Asia) from public databases. Although these data were intended to characterize the human expression prof...


Fine Time Scaling of Purifying Selection on Human Nonsynonymous mtDNA Mutations...

Cavadas, B; Soares, P; Camacho, R; Brandão, A; Costa, M; Fernandes, V; Pereira, J; Rito, T; Samuels, DC; Pereira, L

A high-resolution mtDNA phylogenetic tree allowed us to look backward in time to investigate purifying selection. Purifying selection was very strong in the last 2,500 years, continuously eliminating pathogenic mutations back until the end of the Younger Dryas (∼11,000 years ago), when a large population expansion likely relaxed selection pressure. This was preceded by a phase of stable selection until another ...


The Demise of Multidrug-Resistant HIV-1: the National Time Trend in Portugal

Vercauteren, J; Theys, K; Carvalho, AP; Valadas, E; Duque, LM; Teófilo, E; Faria, T; Faria, D; Vera, J; Aguas, MJ; Peres, S; Mansinho, K; Vandamme, AM

OBJECTIVES: Despite a decreasing mortality and morbidity in treated HIV-1 patients, highly active antiretroviral treatment (HAART) can still fail due to the development of drug resistance. Especially, multidrug-resistant viruses pose a threat to efficient therapy. We studied the changing prevalence of multidrug resistance (MDR) over time in a cohort of HIV-1-infected patients in Portugal. PATIENTS AND METHODS: ...


PopAffiliator: online calculator for individual affiliation to a major populati...

Pereira, L; Alshamali, F; Andreassen, R; Ballard, R; Chantratita, W; Cho, NS; Coudray, C; Dugoujon, JM; Espinoza, M; González-Andrade, F; Hadi, S

Because of their sensitivity and high level of discrimination, short tandem repeat (STR) maker systems are currently the method of choice in routine forensic casework and data banking, usually in multiplexes up to 15-17 loci. Constraints related to sample amount and quality, frequently encountered in forensic casework, will not allow to change this picture in the near future, notwithstanding the technological d...


Use of a new dual-antigen enzyme-linked Immunosorbent assay to detect and chara...

Marcelino, JM; Barroso, H; Goncalves, F; Silva, SM; Novo, C; Gomes, P; Camacho, R; Taveira, N

A dual-antigen enzyme-linked immunosorbent assay specific for human immunodeficiency virus type 2 (HIV-2) envelope proteins, ELISA-HIV2, was developed with two new recombinant polypeptides, rpC2-C3 and rgp36, derived from the HIV-2 envelope. The diagnosti


Different substitutions under drug pressure at protease codon 82 in HIV-1 subty...

Camacho, R; Godinho, AR; Gomes, P; Abecasis, A; Vandamme, AM; Palma, C; Carvalho, AP; Cabanas, J; Goncalves, J


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