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Integrative taxonomy clarifies the evolution of a cryptic primate clade

Elst, Tobias van; Sgarlata, Gabriele M.; Schüßler, Dominik; Tiley, George P.; Poelstra, Jelmer W.; Scheumann, Marina; Blanco, Marina B.

Global biodiversity is under accelerating threats, and species are succumbing to extinction before being described. Madagascar’s biota represents an extreme example of this scenario, with the added complication that much of its endemic biodiversity is cryptic. Here we illustrate best practices for clarifying cryptic diversification processes by presenting an integrative framework that leverages multiple lines o...

Date: 2024   |   Origin: Biblioteca Digital do IPB

The importance of well protected forests for the conservation genetics of West ...

Minhós, Tânia; Borges, Filipa; Parreira, Bárbara; OLIVEIRA, RÚBEN; Aleixo‐Pais, Isa; Leendertz, Fabien H.; Wittig, Roman; Fernandes, C

In tropical forests, anthropogenic activities are major drivers of the destruction and degradation of natural habitats, causing severe biodiversity loss. African colobine monkeys (Colobinae) are mainly folivore and strictly arboreal primates that require large forests to subsist, being among the most vulnerable of all nonhuman primates. The Western red colobus Piliocolobus badius and the King colobus Colobus po...



Consequences of breed formation on patterns of genomic diversity and differenti...

Fonseca, Rute R. da; Ureña, Irene; Afonso, Sandra; Pires, Ana Elisabete; Jørsboe, Emil; Chikhi, Lounès; Ginja, Catarina

Iberian primitive breeds exhibit a remarkable phenotypic diversity over a very limited geographical space. While genomic data are accumulating for most commercial cattle, it is still lacking for these primitive breeds. Whole genome data is key to understand the consequences of historic breed formation and the putative role of earlier admixture events in the observed diversity patterns.


Genetic analyses favour an ancient and natural origin of elephants on Borneo

Sharma, Reeta; Goossens, Benoit; Heller, Rasmus; Rasteiro, Rita; Othman, Nurzhafarina; Bruford, Michael W.; Chikhi, Lounès

The origin of the elephant on the island of Borneo remains elusive. Research has suggested two alternative hypotheses: the Bornean elephant stems either from a recent introduction in the 17th century or from an ancient colonization several hundreds of thousands years ago. Lack of elephant fossils has been interpreted as evidence for a very recent introduction, whereas mtDNA divergence from other Asian elephants...


Comparing maternal genetic variation across two millennia reveals the demograph...

Ottoni, Claudio; Rasteiro, Rita; Willet, Rinse; Claeys, Johan; Talloen, Peter; Van de Vijver, Katrien; Chikhi, Lounès; Poblome, Jeroen; Decorte, Ronny

More than two decades of archaeological research at the site of Sagalassos, in southwest Turkey, resulted in the study of the former urban settlement in all its features. Originally settled in late Classical/early Hellenistic times, possibly from the later fifth century BCE onwards, the city of Sagalassos and its surrounding territory saw empires come and go. The Plague of Justinian in the sixth century CE, whi...


Reassessing the Evolutionary History of the 17q21 Inversion Polymorphism

Alves, Joao M; Lima, Ana C; Pais, Isa A; Amir, Nadir; Celestino, Ricardo; Piras, Giovanna; Monne, Maria; Comas, David; Heutink, Peter; Chikhi, Lounès

A polymorphic inversion that lies on chromosome 17q21 comprises two major haplotype families (H1 and H2) that not only differ in orientation but also in copy-number. Although the processes driving the spread of the inversion-associated lineage (H2) in humans remain unclear, a selective advantage has been proposed for one of its subtypes. Here, we genotyped a large panel of individuals from previously overlooked...


Reassessing the Evolutionary History of the 17q21 Inversion Polymorphism

Alves, Joao M.; Lima, Ana C.; Pais, Isa A.; Amir, Nadir; Celestino, Ricardo; Piras, Giovanna; Monne, Maria; Comas, David; Heutink, Peter; Chikhi, Lounès

A polymorphic inversion that lies on chromosome 17q21 comprises two major haplotype families (H1 and H2) that not only differ in orientation but also in copy-number. Although the processes driving the spread of the inversion-associated lineage (H2) in humans remain unclear, a selective advantage has been proposed for one of its subtypes. Here, we genotyped a large panel of individuals from previously overlooked...


Conservation Status and Abundance of the Crowned Sifaka (Propithecus coronatus)

Salmona, Jordi; Rasolondraibe, Emmanuel; Jan, Fabien; Besolo, Aubin; Rakotoarisoa, Heriniaina; Meyler, Sam Viana; Wohlhauser, Sébastien

The crowned sifaka (Propithecus coronatus) is Endangered. It has a large but highly fragmented distribution; its known range extends from the Betsiboka River in the north of Madagascar, to the Mahavavy River in the north-west, and down to the Tsiribihina River in the south-west. The species lives in forest habitats that are highly and increasingly fragmented and are continuously suffering perturbations and dest...


New density estimates of a threatened sifaka species (Propithecus coquereli) in...

Kun-Rodrigues, Célia; Salmona, Jordi; Besolo, Aubin; Rasolondraibe, Emmanuel; Rabarivola, Clément; Marques, Tiago A.; Chikhi, Lounès

Propithecus coquereli is one of the last sifaka species for which no reliable and extensive density estimates are yet available. Despite its endangered conservation status [IUCN, 2012] and recognition as a flagship species of the northwestern dry forests of Madagascar, its population in its last main refugium, the Ankarafantsika National Park (ANP), is still poorly known. Using line transect distance sampling s...


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