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Linking Tree Health, Rhizosphere Physicochemical Properties, and Microbiome in ...

Pinho, Diogo; Barroso, Cristina; Froufe, Hugo; Brown, Nathan; Vanguelova, Elena; Egas, Conceição; Denman, Sandra

Forest decline diseases are complex processes driven by biotic and abiotic factors. Although information about host–microbiome–environment interactions in agricultural systems is emerging rapidly, similar studies on tree health are still in their infancy. We used acute oak decline (AOD) as a model system to understand whether the rhizosphere physicochemical properties and microbiome are linked to tree health by...


Draft genome sequence of Bacillus amyloliquefaciens subsp. plantarum strain Fit...

Pinto, Cátia; Sousa, Susana; Froufe, Hugo; Egas, Conceição; Clément, Christophe; Fontaine, Florence; Gomes, Ana C.

Bacillus amyloliquefaciens subsp. plantarum strain Fito_F321 is a naturally occurring strain in vineyard, with the ability to colonise grapevine and which unveils a naturally antagonistic potential against phytopathogens of grapevine, including those responsible for the Botryosphaeria dieback, a GTD disease. Herein we report the draft genome sequence of B. amyloliquefaciens subsp. plantarum Fito_F321, isolated ...


Priming of a DNA metabarcoding approach for species identification and inventor...

Hollatz, Claudia; Leite, Bárbara Daniela Rocha; Lobo, Jorge; Froufe, Hugo; Egas, Conceição; Costa, Filipe O.

In marine and estuarine benthic communities, the inventory and estimation of species richness are often hampered by the need for broad taxonomic expertise across several phyla. The use of DNA metabarcoding has emerged as a powerful tool for the fast assessment of species composition in a diversity of ecological communities. Here, we tested the amplification success of five primer sets targeting different COI-5P...


Salmonella Enteritidis Isolate Harboring Multiple Efflux Pumps and Pathogenicit...

Jones-Dias, Daniela; Clemente, Lurdes; Egas, Conceição; Froufe, Hugo; Sampaio, Daniel A; Vieira, Luís; Fookes, Maria; Thomson, Nicholas R

BACKGROUND: Salmonella enterica is one of the most important causes of gastrointestinal infection in humans, being the great majority of infections related to the consumption of poultry meat and eggs (Foley and Lynne, 2008; EFSA/ECDC, 2015). In animals, infections caused by serotype Enteritidis are rarely responsible for severe disease with animals frequently becoming asymptomatic carriers, except in the case o...


Ancient DNA in archaeological garum remains from the south of Portugal

Landi, Mónica; Araújo, Alfredo Filipe Ferreira; Bernardes, João Pedro; Morais, Rui; Froufe, Hugo; Egas, Conceição; Oliveira, César João Santos


Microbial diversity in deep-sea sediments from the Menez Gwen hydrothermal vent...

Cerqueira, Teresa; Pinho, Diogo; Egas, Conceição; Froufe, Hugo; Altermark, Bjorn; Candeias, Carla; Santos, Ricardo S.; Bettencourt, Raul

Deep-sea hydrothermal sediments are known to support remarkably diverse microbial consortia. Culture-independent sequence-based technologies have extensively been used to disclose the associated microbial diversity as most of the microorganisms inhabiting these ecosystems remain uncultured. Here we provide the first description of the microbial community diversity found on sediments from Menez Gwen vent system....


Forma rara de distrofia muscular (ligada ao gene CHKB) identificada através da ...

Oliveira, Jorge; Negrão, Luís; Fineza, Isabel; Gonçalves, Ana Rita; Froufe, Hugo; Egas, Conceição; Sousa, Mário; Santos, Rosário


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