12 documents found, page 1 of 2
How genomics can help biodiversity conservation
Theissinger, Kathrin; Fernandes, Carlos; Formenti, Giulio; Bista, Iliana; Berg, Paul R.; Bleidorn, Christoph; Bombarely, Aureliano; Crottini, AngelicaABSTRACT: The availability of public genomic resources can greatly assist biodiversity assessment, conservation, and restoration efforts by providing evidence for scientifically informed management decisions. Here we survey the main approaches and applications in biodiversity and conservation genomics, considering practical factors, such as cost, time, prerequisite skills, and current shortcomings of applicatio...
How genomics can help biodiversity conservation
Theissinger, Kathrin; Fernandes, C; Formenti, Giulio; Bista, Iliana; Berg, Paul R.; Bleidorn, Christoph; Bombarely, Aureliano; Crottini, AngelicaThe availability of public genomic resources can greatly assist biodiversity assessment, conservation, and restoration efforts by providing evidence for scientifically informed management decisions. Here we survey the main approaches and applications in biodiversity and conservation genomics, considering practical factors, such as cost, time, prerequisite skills, and current shortcomings of applications. Most a...
An Atlas of Plant Transposable Elements
Domingues, Douglas Silva [UNESP]; Paschoal, Alexandre Rossi; Pedro, Daniel Longhi Fernandes; Amorim, Tharcisio Soares; Varani, Alessandro [UNESP]Made available in DSpace on 2022-04-28T19:49:06Z (GMT). No. of bitstreams: 0 Previous issue date: 2021-01-01; Advances in genomic sequencing have recently offered vast opportunities for biological exploration, unraveling the evolution and improving our understanding of Earth biodiversity. Due to distinct plant species characteristics in terms of genome size, ploidy and heterozygosity, transposable elements (TEs...
An Atlas of Plant Transposable Elements
Pedro, Daniel Longhi Fernandes; Amorim, Tharcisio Soares; Varani, Alessandro [UNESP]; Guyot, Romain; Domingues, Douglas Silva [UNESP]Made available in DSpace on 2022-04-28T19:50:06Z (GMT). No. of bitstreams: 0 Previous issue date: 2021-01-01; Advances in genomic sequencing have recently offered vast opportunities for biological exploration, unraveling the evolution and improving our understanding of Earth biodiversity. Due to distinct plant species characteristics in terms of genome size, ploidy and heterozygosity, transposable elements (TEs...
The era of reference genomes in conservation genomics
Formenti, Giulio; Theissinger, Kathrin; Fernandes, Carlos; Bista, Iliana; Bombarely, Aureliano; Bleidorn, Christoph; Ciofi, Claudio; Crottini, AngelicaProgress in genome sequencing now enables the large-scale generation of reference genomes. Various international initiatives aim to generate reference genomes representing global biodiversity. These genomes provide unique insights into genomic diversity and architecture, thereby enabling comprehensive analyses of population and functional genomics, and are expected to revolutionize conservation genomics.
The era of reference genomes in conservation genomics
Formenti, Giulio; Theissinger, Kathrin; Fernandes, C; Bista, Iliana; Bombarely, Aureliano; Bleidorn, Christoph; Ciofi, Claudio; Crottini, Angelica
Genome-Wide Screening and Characterization of Non-Coding RNAs in Coffea canephora
Lemos, Samara M. C. [UNESP]; Foncatti, Luiz F. C.; Guyot, Romain; Paschoal, Alexandre R.; Domingues, Douglas S. [UNESP]Made available in DSpace on 2021-06-25T11:23:13Z (GMT). No. of bitstreams: 0 Previous issue date: 2020-09-01; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES); Coffea canephoragrains are highly traded commodities worldwide. Non-coding RNAs (ncRNAs) are transcriptional products involved in genome regulation, environmental responses, and plant development. There is not an extensive genome-wide ...
An integrated analysis of mRNA and sRNA transcriptional profiles in Coffea arab...
Santos, Tiago Benedito dos; Soares, Joao D. M.; Lima, Joni E.; Silva, Juliana C.; Ivamoto, Suzana T. [UNESP]; Baba, Viviane Y.; Souza, Silvia G. H.Made available in DSpace on 2019-10-04T12:33:56Z (GMT). No. of bitstreams: 0 Previous issue date: 2019-01-01; Brazilian Coffee Research Consortium; Fundacao Araucaria; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES); Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq); Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP); Coffea arabica L. is an important agricultur...
Genome-wide association study reveals candidate genes influencing lipids and di...
Sant'Ana, Gustavo C.; Pereira, Luiz F. P.; Pot, David; Ivamoto, Suzana T. [UNESP]; Domingues, Douglas S. [UNESP]; Ferreira, Rafaelle V.Made available in DSpace on 2018-11-26T15:46:08Z (GMT). No. of bitstreams: 0 Previous issue date: 2018-01-11; Brazilian Coffee Research Consortium; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES); Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP); Ciencia sem Fronteiras; Brazilian Coffee Research Consortium, INCT Cafe; Conselho Nacional de Desenvolvimento Científico e Tecnológico...
Inpactor, integrated and parallel analyzer and classifier of LTR retrotransposo...
Orozco-Arias, Simon; Liu, Juan; Tabares-Soto, Reinel; Ceballos, Diego; Domingues, Douglas Silva [UNESP]; Garavito, Andréa; Ming, Ray; Guyot, RomainMade available in DSpace on 2018-12-11T16:53:56Z (GMT). No. of bitstreams: 0 Previous issue date: 2018-01-01; One particular class of Transposable Elements (TEs), called Long Terminal Repeats (LTRs), retrotransposons, comprises the most abundant mobile elements in plant genomes. Their copy number can vary from several hundreds to up to a few million copies per genome, deeply affecting genome organization and fu...