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The mitochondrial genomes of Iberian freshwater and diadromous fishes

Veríssimo, Joana; Curto, Manuel; Alves, Maria Judite; Almeida, Pedro Raposo de; Aparicio, Enric; Clavero, Miguel; Chaves, Cátia

The Iberian Peninsula, in southwestern Europe, is home to a distinctive freshwater fish fauna, predominantly composed of endemic species. This is a consequence of the prolonged isolation from western Europe caused by the Pyrenees, the diverse geological and climatic gradients, and the isolation of river basins. Freshwater and diadromous fishes have diversified in the Iberian Peninsula and include 72 currently r...

Date: 2025   |   Origin: Biblioteca Digital do IPB

Freshwater fish community assessment using eDNA metabarcoding vs. capture-based...

Curto, Manuel; Batista, Sofia; Santos, Carlos D.; Ribeiro, Filipe; Nogueira, Sofia; Ribeiro, Diogo; Prindle, Benjamin; Licari, Daniel; Riccioni, Giulia

Environmental DNA (eDNA) metabarcoding has revolutionized ecological and environmental research by describing communities without relying on direct observations, making it a powerful, non-invasive, and cost-effective tool in biodiversity monitoring. However, the adoption of eDNA as a standard protocol in long-term monitoring programs, which have traditionally relied on capture-based methods, presents challenges...


The mitochondrial genomes of Iberian freshwater and diadromous fishes

Veríssimo, Joana; Curto, Manuel; Alves, Maria Judite; de Almeida, Pedro Raposo; Aparicio, Enric; Clavero, Miguel; Chaves, Cátia

The Iberian Peninsula, in southwestern Europe, is home to a distinctive freshwater fish fauna, predominantly composed of endemic species. This is a consequence of the prolonged isolation from western Europe caused by the Pyrenees, the diverse geological and climatic gradients, and the isolation of river basins. Freshwater and diadromous fishes have diversified in the Iberian Peninsula and include 72 currently r...


How genomics can help biodiversity conservation

Theissinger, Kathrin; Fernandes, Carlos; Formenti, Giulio; Bista, Iliana; Berg, Paul R.; Bleidorn, Christoph; Bombarely, Aureliano; Crottini, Angelica

ABSTRACT: The availability of public genomic resources can greatly assist biodiversity assessment, conservation, and restoration efforts by providing evidence for scientifically informed management decisions. Here we survey the main approaches and applications in biodiversity and conservation genomics, considering practical factors, such as cost, time, prerequisite skills, and current shortcomings of applicatio...


How genomics can help biodiversity conservation

Theissinger, Kathrin; Fernandes, C; Formenti, Giulio; Bista, Iliana; Berg, Paul R.; Bleidorn, Christoph; Bombarely, Aureliano; Crottini, Angelica

The availability of public genomic resources can greatly assist biodiversity assessment, conservation, and restoration efforts by providing evidence for scientifically informed management decisions. Here we survey the main approaches and applications in biodiversity and conservation genomics, considering practical factors, such as cost, time, prerequisite skills, and current shortcomings of applications. Most a...


The era of reference genomes in conservation genomics

Formenti, Giulio; Theissinger, Kathrin; Fernandes, Carlos; Bista, Iliana; Bombarely, Aureliano; Bleidorn, Christoph; Ciofi, Claudio; Crottini, Angelica

Progress in genome sequencing now enables the large-scale generation of reference genomes. Various international initiatives aim to generate reference genomes representing global biodiversity. These genomes provide unique insights into genomic diversity and architecture, thereby enabling comprehensive analyses of population and functional genomics, and are expected to revolutionize conservation genomics.


The era of reference genomes in conservation genomics

Formenti, Giulio; Theissinger, Kathrin; Fernandes, C; Bista, Iliana; Bombarely, Aureliano; Bleidorn, Christoph; Ciofi, Claudio; Crottini, Angelica


Demographic history has shaped the strongly differentiated corkwing wrasse popu...

Mattingsdal, Morten; Jorde, Per Erik; Knutsen, Halvor; Jentoft, Sissel; Stenseth, Nils Christian; Sodeland, Marte; Robalo, Joana I; Hansen, Michael M.

Understanding the biological processes involved in genetic differentiation and divergence between populations within species is a pivotal aim in evolutionary biology. One particular phenomenon that requires clarification is the maintenance of genetic barriers despite the high potential for gene flow in the marine environment. Such patterns have been attributed to limited dispersal or local adaptation, and to a ...


Interbreeding between local and translocated populations of a cleaner fish in a...

Gonzalez, Enrique Blanco; Espeland, Sigurd H.; Jentoft, Sissel; Hansen, Michael M.; Robalo, Joana Isabel; Stenseth, Nils Christian; Jorde, Per Erik

Translocation of organisms within or outside its native range carries the risk of modifying the community of the recipient ecosystems and induces gene flow between locally adapted populations or closely related species. In this study, we evaluated the genetic consequences of large‐scale translocation of cleaner wrasses that has become a common practice within the salmon aquaculture industry in northern Europe t...


A continuous genome assembly of the corkwing wrasse (Symphodus melops)

Mattingsdal, Morten; Jentoft, Sissel; Torresen, Ole K.; Knutsen, Halvor; Hansen, Michael M.; Robalo, Joana Isabel; Zagrodzka, Zuzanna; André, Carl

The wrasses (Labridae) are one of the most successful and species-rich families of the Perciformes order of teleost fish. Its members display great morphological diversity, and occupy distinct trophic levels in coastal waters and coral reefs. The cleaning behaviour displayed by some wrasses, such as corkwing wrasse (Symphodus melops), is of particular interest for the salmon aquaculture industry to combat and c...


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