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From laboratory to the field: Validating molecular markers of effect in Folsomi...

Simões, Tiago; Novais, Sara C; Luz, Tiago Natal da; Renaud, Mathieu; Leston, Sara; Ramos, Fernando; Römbke, Jörg; Roelofs, Dick; van Straalen, Nico M

Under controlled laboratory conditions, toxicity data tend to be less variable than in more realistic in-field studies and responses may thus differ from those in the natural environment, creating uncertainty. The validation of data under environmental conditions is therefore a major asset in environmental risk assessment of chemicals. The present study aimed to validate the mode of action of a commercial fungi...


Fate and effects of two pesticide formulations in the invertebrate Folsomia can...

Simões, Tiago; Novais, Sara C.; Natal-da-Luz, Tiago; Leston, Sara; Rosa, João; Ramos, Fernando; Pouca, Ana Sofia Vila; Freitas, Andreia; Barbosa, Jorge

Degradation rates of two widely used pesticides were assessed, and acute and chronic effects on a standard invertebrate species investigated. An herbicide (Montana®) and fungicide (Bravo500®) formulations were investigated and results were compared to the isolated active substances of each formulation (glyphosate and chlorothalonil, respectively). Tests were performed using the invertebrate Folsomia candida as ...

Date: 2019   |   Origin: IC-online

Using time-lapse omics correlations to integrate toxicological pathways of a fo...

Simões, Tiago; Novais, Sara C.; Natal-da-Luz, Tiago; Devreese, Bart; de Boer, Tjalf; Roelofs, Dick; Sousa, José P.; Van Straalen, Nico M.

The use of an integrative molecular approach can actively improve the evaluation of environmental health status and impact of chemicals, providing the knowledge to develop sentinel tools that can be integrated in risk assessment studies, since gene and protein expressions represent the first response barriers to anthropogenic stress. This work aimed to determine the mechanisms of toxic action of a widely applie...

Date: 2019   |   Origin: IC-online

An integrative omics approach to unravel toxicity mechanisms of environmental c...

Simões, Tiago; Novais, Sara C; Luz, Tiago Natal da; Devreese, Bart; de Boer, Tjalf; Roelofs, Dick; Sousa, José P.; van Straalen, Nico M

The use of integrative molecular approaches can aid in a comprehensive understanding of the effects of toxicants at different levels of biological organization, also supporting risk assessment. The present study aims to unravel the toxicity mechanisms of a widely used herbicide to the arthropod Folsomia candida exposed in a natural soil, by linking effects on reproduction, proteomics and genome-wide gene expres...


An integrative omics approach to unravel toxicity mechanisms of environmental c...

Simões, Tiago; Novais, Sara C.; Natal-da-Luz, Tiago; Devreese, Bart; de Boer, Tjalf; Roelofs, Dick; Sousa, José P.; van Straalen, Nico M.

The use of integrative molecular approaches can aid in a comprehensive understanding of the effects of toxicants at different levels of biological organization, also supporting risk assessment. The present study aims to unravel the toxicity mechanisms of a widely used herbicide to the arthropod Folsomia candida exposed in a natural soil, by linking effects on reproduction, proteomics and genome-wide gene expres...

Date: 2018   |   Origin: IC-online

Transcriptome assembly and microarray construction for Enchytraeus crypticus, a...

Castro-Ferreira, Marta P.; de Boer, Tjalf E.; Colbourne, John K.; Vooijs, Riet; van Gestel, Cornelis A. M.; van Straalen, Nico M.

The soil worm Enchytraeus crypticus (Oligochaeta) is an ecotoxicology model species that, until now, was without genome or transcriptome sequence information. The present research aims at studying the transcriptome of Enchytraeus crypticus, sampled from multiple test conditions, and the construction of a high-density microarray for functional genomic studies. Over 1.5 million cDNA sequence reads were obtained r...


Enchytraeus albidus microarray: enrichment, design, annotation and database (En...

Novais, Sara C.; Arrais, Joel; Lopes, Pedro; Vandenbrouck, Tine; De Coen, Wim; Roelofs, Dick; Soares, Amadeu M. V. M.; Amorim, Mónica J. B.

Enchytraeus albidus (Oligochaeta) is an ecologically relevant species used as standard test organisms for risk assessment. Effects of stressors in this species are commonly determined at the population level using reproduction and survival as endpoints. The assessment of transcriptomic responses can be very useful e.g. to understand underlying mechanisms of toxicity with gene expression fingerprinting. In the p...


Enchytraeus crypticus as model species in soil ecotoxicology

Castro-Ferreira, Marta P.; Roelofs, Dick; van Gestel, Cornelis A. M.; Verweij, Rudo A.; Soares, Amadeu M. V. M.; Amorim, Mónica J. B.

Enchytraeids are ecologically relevant soil organisms, due to their activity in decomposition and bioturbation in many soil types worldwide. The enchytraeid reproduction test (ERT) guidelines ISO 16387 and OECD 220 are exclusive to the genus Enchytraeus and recommend using the species E. albidus with a 6-week test period. The suggested alternative, E. crypticus has a shorter generation time which may enable the...


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