Funding Information: The present work was submitted by C.S.M. as partial fulfillment of a Ph.D. degree at the Faculty of Biology and Medicine of the University of Lausanne. Sequencing was performed at the Lausanne Genomic Technologies Facility, University of Lausanne. We thank Patrick Taffé (Unisanté, Division of Biostatistics, University of Lausanne) for input into the simulation experiments. This work was sup...
Publisher Copyright: © 2023, The Author(s).; Correction to: Nature Communications, published online 02 November 2023 The original version of this Article contained an error in Fig. 1. In panels a and b the 3 black stars in each panel identifying the patients infected by a single strain were missing. These have now been added in panel a and b in Fig 1. In addition, in the Result section of the main text the tabs...