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Variants at the ASIP locus contribute to coat color darkening in Nellore cattle
Trigo, Beatriz B. [UNESP]; Utsunomiya, Adam T. H.; Fortunato, Alvaro A. A. D. [UNESP]; Milanesi, Marco [UNESP]; Torrecilha, Rafaela B. P.Made available in DSpace on 2021-06-25T10:58:52Z (GMT). No. of bitstreams: 0 Previous issue date: 2021-12-01; Meat and Livestock Australia; Background: Nellore cattle (Bos indicus) are well-known for their adaptation to warm and humid environments. Hair length and coat color may impact heat tolerance. The Nellore breed has been strongly selected for white coat, but bulls generally exhibit darker hair ranging fr...
In silico and in vitro evaluation of primers for molecular differentiation of l...
Trigo, Beatriz Batista [UNESP]; de Oliveira-Rovai, Fernanda Muller [UNESP]; Milanesi, Marco [UNESP]; Ito, Pier Kenji Rauschkolb Katsuda [UNESP]Made available in DSpace on 2021-06-25T11:13:29Z (GMT). No. of bitstreams: 0 Previous issue date: 2021-01-01. Added 1 bitstream(s) on 2021-07-15T15:24:13Z : No. of bitstreams: 1 S1984-29612021000100306.pdf: 698199 bytes, checksum: 2c96d92bcc6a5767262e838ccdb25496 (MD5); Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP); University of Maryland; Coordenação de Aperfeiçoamento de Pessoal de Nível Super...
Methylome Patterns of Cattle Adaptation to Heat Stress
Del Corvo, Marcello; Lazzari, Barbara; Capra, Emanuele; Zavarez, Ludmilla [UNESP]; Milanesi, Marco [UNESP]; Utsunomiya, Yuri Tani [UNESP]Made available in DSpace on 2021-06-25T11:18:43Z (GMT). No. of bitstreams: 0 Previous issue date: 2021-05-28; Heat stress has a detrimental impact on cattle health, welfare and productivity by affecting gene expression, metabolism and immune response, but little is known on the epigenetic mechanisms mediating the effect of temperature at the cellular and organism level. In this study, we investigated genome-wid...
PANEV: an R package for a pathway-based network visualization
Palombo, Valentino; Milanesi, Marco [UNESP]; Sferra, Gabriella; Capomaccio, Stefano; Sgorlon, Sandy; D'Andrea, MariasilviaMade available in DSpace on 2020-12-10T19:49:10Z (GMT). No. of bitstreams: 0 Previous issue date: 2020-02-06; Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP); Background During the last decade, with the aim to solve the challenge of post-genomic and transcriptomic data mining, a plethora of tools have been developed to create, edit and analyze metabolic pathways. In particular, when a complex phen...
Unsupervised detection of ancestry tracks with the GHap r package
Utsunomiya, Yuri Tani [UNESP]; Milanesi, Marco [UNESP]; Barbato, Mario; Utsunomiya, Adam Taiti Harth [UNESP]; Sölkner, Johann; Ajmone-Marsan, PaoloMade available in DSpace on 2020-12-12T02:21:44Z (GMT). No. of bitstreams: 0 Previous issue date: 2020-01-01; The identification of ancestry tracks is a powerful tool to assist the inference of evolutionary events in the genomes of animals and plants. However, algorithms for ancestry track detection typically require labelled reference population data. This dependency prevents the analysis of genomic data lacki...
Combining Landscape Genomics and Ecological Modelling to Investigate Local Adap...
Vajana, Elia; Barbato, Mario; Colli, Licia; Milanesi, Marco [UNESP]; Rochat, Estelle; Fabrizi, Enrico; Mukasa, Christopher; Del Corvo, MarcelloMade available in DSpace on 2019-10-04T12:30:59Z (GMT). No. of bitstreams: 0 Previous issue date: 2018-10-03; European Union; Doctoral School on the Agro-Food System (Agrisystem) of the Universita Cattolica del Sacro Cuore (Italy); Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP); East Coast fever (ECF) is a fatal sickness affecting cattle populations of eastern, central, and southern Africa. The d...
Association of Copy Number Variation at Intron 3 of HMGA2 With Navel Length in ...
Aguiar, Tamiris Sayuri [UNESP]; Pintor Torrecilha, Rafaela Beatriz [UNESP]; Milanesi, Marco [UNESP]; Harth Utsunomiya, Adam Taiti [UNESP]Made available in DSpace on 2019-10-04T12:33:28Z (GMT). No. of bitstreams: 0 Previous issue date: 2018-12-07; Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP); Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq); Navel injuries caused by friction against the pasture can promote infection, reproductive problems and costly treatments in beef cattle raised in extensive systems. A hapl...
Signatures of selection and environmental adaptation across the goat genome pos...
Bertolini, Francesca; Servin, Bertrand; Talenti, Andrea; Rochat, Estelle; Kim, Eui Soo; Oget, Claire; Palhière, Isabelle; Crisà, AlessandraMade available in DSpace on 2019-10-06T15:24:30Z (GMT). No. of bitstreams: 0 Previous issue date: 2018-11-19; Background: Since goat was domesticated 10,000 years ago, many factors have contributed to the differentiation of goat breeds and these are classified mainly into two types: (i) adaptation to different breeding systems and/or purposes and (ii) adaptation to different environments. As a result, approxima...
Genome-wide SNP profiling of worldwide goat populations reveals strong partitio...
Colli, Licia; Milanesi, Marco [UNESP]; Talenti, Andrea; Bertolini, Francesca; Chen, Minhui; Crisà, Alessandra; Daly, Kevin Gerard; Del Corvo, MarcelloMade available in DSpace on 2019-10-06T15:24:31Z (GMT). No. of bitstreams: 0 Previous issue date: 2018-11-19; Background: Goat populations that are characterized within the AdaptMap project cover a large part of the worldwide distribution of this species and provide the opportunity to assess their diversity at a global scale. We analysed genome-wide 50 K single nucleotide polymorphism (SNP) data from 144 popula...
A PLAG1 mutation contributed to stature recovery in modern cattle
Utsunomiya, Yuri Tani [UNESP]; Milanesi, Marco [UNESP]; Utsunomiya, Adam Taiti Harth [UNESP]; Torrecilha, Rafaela Beatriz Pintor [UNESP]; Kim, Eui-SooMade available in DSpace on 2018-12-11T17:16:50Z (GMT). No. of bitstreams: 0 Previous issue date: 2017-12-01; The recent evolution of cattle is marked by fluctuations in body size. Height in the Bos taurus lineage was reduced by a factor of ∼1.5 from the Neolithic to the Middle Ages, and increased again only during the Early Modern Ages. Using haplotype analysis, we found evidence that the bovine PLAG1 mutation...