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Reconstruction of cell-specific models capturing the influence of metabolism on...

Barata, Tânia; Pereira, Vítor; Neves, Ricardo Pires das; Rocha, Miguel

The imbalance of epigenetic regulatory mechanisms such as DNA methylation, which can promote aberrant gene expression profiles without affecting the DNA sequence, may cause the deregulation of signaling, regulatory, and metabolic processes, contributing to a cancerous phenotype. Since some metabolites are substrates and cofactors of epigenetic regulators, their availability can be affected by characteristic can...


Each Cellular Compartment Has a Characteristic Protein Reactive Cysteine Ratio ...

Neves, Ricardo Pires das; Chagoyen, Mónica; Martinez-Lorente, Antonio; Iñiguez, Carlos; Calatrava, Ana; Calabuig, Juana; Iborra, Francisco J

Signaling and detoxification of Reactive Oxygen Species (ROS) are important patho-physiologcal processes. Despite this, we lack comprehensive information on individual cells and cellular structures and functions affected by ROS, which is essential to build quantitative models of the effects of ROS. The thiol groups from cysteines (Cys) in proteins play a major role in redox defense, signaling, and protein funct...


Correction for: Identification of colorectal cancer associated biomarkers: an i...

Fonseca, André; Ramalhete, Sara Ventura; Mestre, André; Neves, Ricardo Pires das; Marreiros, Ana; Castelo Branco, Pedro; Roberto, Vânia Palma


Reconstruction of tissue-specific genome-scale metabolic models for human cance...

Barata, Tânia; Vieira, Vítor; Rodrigues, Rúben André Costa; Neves, Ricardo Pires das; Rocha, Miguel

Cancer Stem Cells (CSCs) contribute to cancer aggressiveness, metastasis, chemo/radio-therapy resistance, and tumor recurrence. Recent studies emphasized the importance of metabolic reprogramming of CSCs for the maintenance and progression of the cancer phenotype through both the fulfillment of the energetic requirements and the supply of substrates fundamental for fast-cell growth, as well as through metabolit...


Screening for Colorectal Cancer Leading into a New Decade: The “Roaring ‘20s” f...

Almeida-Lousada, Hélder; Mestre, André; Ramalhete, Sara; Price, Aryeh J.; Mello, Ramon Andrade de; Marreiros, Ana D.; Neves, Ricardo Pires das

Colorectal cancer (CRC) has an important bearing (top five) on cancer incidence and mortality in the world. The etiology of sporadic CRC is related to the accumulation of genetic and epigenetic alterations that result in the appearance of cancer hallmarks such as abnormal proliferation, evasion of immune destruction, resistance to apoptosis, replicative immortality, and others, contributing to cancer promotion,...


Immunomodulatory Properties of Umbilical Cord Blood-Derived Small Extracellular...

Rodrigues, Sílvia C.; Cardoso, Renato M. S.; Freire, Patricia C.; Gomes, Cláudia F.; Duarte, Filipe V.; Neves, Ricardo Pires das; Simões-Correia, Joana

Umbilical cord blood (UCB) has long been seen as a rich source of naïve cells with strong regenerative potential, likely mediated by paracrine signals. More recently, small extracellular vesicles (sEV), such as exosomes, have been shown to play essential roles in cell-to-cell communication, via the transport of numerous molecules, including small RNAs. Often explored for their potential as biomarkers, sEV are n...


Identification of colorectal cancer associated biomarkers: an integrated analys...

Fonseca, André; Ramalhete, Sara Ventura; Mestre, André; Neves, Ricardo Pires das; Marreiros, Ana; Castelo Branco, Pedro; Roberto, Vânia Palma

Colorectal cancer is one of the leading causes of cancer-related deaths worldwide. This complex disease still holds severe problems concerning diagnosis due to the high invasiveness nature of colonoscopy and the low accuracy of the alternative diagnostic methods. Additionally, patient heterogeneity even within the same stage is not properly reflected in the current stratification system. This scenario highlight...


Screening for colorectal cancer leading into a new decade: the “Roaring ‘20s” f...

Almeida-Lousada, Hélder; Mestre, André; Ramalhete, Sara Maria Ventura; Price, Aryeh J.; De Mello, Ramon Andrade; Marreiros, Ana

Colorectal cancer (CRC) has an important bearing (top five) on cancer incidence and mortality in the world. The etiology of sporadic CRC is related to the accumulation of genetic and epigenetic alterations that result in the appearance of cancer hallmarks such as abnormal proliferation, evasion of immune destruction, resistance to apoptosis, replicative immortality, and others, contributing to cancer promotion,...


Cofilin-1 Is a Mechanosensitive Regulator of Transcription

Domingues, Catarina; Geraldo, A. Margarida; Anjo, Sandra I.; Matos, André; Almeida, Cláudio; Caramelo, Inês; Lopes-da-Silva, José A; Paiva, Artur

The mechanical properties of the extracellular environment are interrogated by cells and integrated through mechanotransduction. Many cellular processes depend on actomyosin-dependent contractility, which is influenced by the microenvironment's stiffness. Here, we explored the influence of substrate stiffness on the proteome of proliferating undifferentiated human umbilical cord-matrix mesenchymal stem/stromal ...


Soft culture substrates favor stem-like cellular phenotype and facilitate repro...

Gerardo, Heloísa; Lima, Ana; Carvalho, João; Ramos, João R. D.; Couceiro, Sofia; Travasso, Rui D.; Neves, Ricardo Pires das; Grãos, Mário

Biophysical cues influence many aspects of cell behavior. Stiffness of the extracellular matrix is probed by cells and transduced into biochemical signals through mechanotransduction protein networks, strongly influencing stem cell behavior. Cellular stemness is intimately related with mechanical properties of the cell, like intracellular contractility and stiffness, which in turn are influenced by the microenv...


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