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dispfit: An R package to estimate species dispersal kernels

Proença-Ferreira, António; Borda-de-Água, Luís; Porto, Miguel; Mira, António; Moreira, Francisco; Pita, Ricardo

Dispersal of organisms is a ubiquitous aspect of the natural world, with wide implications across scales and organization levels. Interest in dispersal has risen sharply over the past 30 years, mostly due to the multiple and rapid global changes ecosystems face. Among the various aspects that may characterize a dispersion event, dispersal distance is considered a key descriptor in a wide variety of studies acro...


Reform wildlife trade in the European Union

Cardoso, Pedro; Fukushima, Caroline S.; Maxhelaku, Armela; Poczai, Peter; Porto, Miguel; Puksas, Andrius; Reino, Luís; Saar, Indrek; Stringham, Oliver


Using citizen science data for predicting the timing of ecological phenomena ac...

Capinha, César; Ceia-Hasse, Ana; de-Miguel, Sergio; Vila-Viçosa, Carlos; Porto, Miguel; Jarić, Ivan; Tiago, Patricia; Fernández, Néstor; Valdez, Jose

The scarcity of long-term observational data has limited the use of statistical or machine-learning techniques for predicting intraannual ecological variation. However, time-stamped citizen-science observation records, supported by media data such as photographs, are increasingly available. In the present article, we present a novel framework based on the concept of relative phenological niche, using machine-le...


Using citizen science data for predicting the timing of ecological phenomena ac...

Capinha, César; Ceia-Hasse, Ana; de-Miguel, Sergio; Vila-Viçosa, Carlos; Porto, Miguel; Jarić, Ivan; Tiago, Patrícia; Fernández, Néstor; Valdez, Jose

The scarcity of long-term observational data has limited the use of statistical or machine-learning techniques for predicting intraannual ecological variation. However, time-stamped citizen-science observation records, supported by media data such as photographs, are increasingly available. In the present article, we present a novel framework based on the concept of relative phenological niche, using machine-le...


Traditional ploughing is critical to the conservation of threatened plants in M...

Pereira, Ana Júlia; Porto, Miguel; Correia, Otília; Beja, Pedro

Arable plant diversity has been dramatically declining due to agriculture intensification, with several arable species currently included in national Red Lists. This is particularly relevant in the case of plant communities of the traditional Mediterranean agricultural systems. Despite the current knowledge about the factors affecting this diversity, it is not clear how these communities, which have likely evol...


Traditional ploughing is critical to the conservation of threatened plants in M...

Pereira, Ana Júlia; Porto, Miguel; Correia, Otília; Beja, Pedro

Arable plant diversity has been dramatically declining due to agriculture intensification, with several arable species currently included in national Red Lists. This is particularly relevant in the case of plant communities of the traditional Mediterranean agricultural systems. Despite the current knowledge about the factors affecting this diversity, it is not clear how these communities, which have likely evol...


Frequency of CDH1, CTNNA1 and CTNND1 germline variants in families with diffuse...

Guerra, Joana; Pinto, Carla; Pinto, Pedro; Pinheiro, Manuela; Santos, Catarina; Peixoto, Ana; Escudeiro, Carla; Barbosa, Ana; Porto, Miguel

Hereditary diffuse gastric cancer (HDGC) is caused by germline pathogenic variants in the CDH1 and CTNNA1 genes and is characterized by a high prevalence of diffuse gastric cancer and lobular breast cancer. We aimed to evaluate the contribution of CTNNA1 and CTNND1 germline variants to HDGC, as well as to compare the frequencies of CDH1 and CTNNA1 (and eventually CTNND1) germline variants between patients with ...


Combined germline and tumor mutation signature testing identifies new families ...

Pinto, Carla; Guerra, Joana; Pinheiro, Manuela; Escudeiro, Carla; Santos, Catarina; Pinto, Pedro; Porto, Miguel; Bartosch, Carla; Silva, João

NTHL1 tumor syndrome is an autosomal recessive rare disease caused by biallelic inactivating variants in the NTHL1 gene and which presents a broad tumor spectrum. To contribute to the characterization of the phenotype of this syndrome, we studied 467 index patients by KASP assay or next-generation sequencing, including 228 patients with colorectal polyposis and 239 patients with familial/personal history of mul...


dispfit: An R package to estimate species dispersal kernels

Proença-Ferreira, António; Borda-de-Água, Luís; Porto, Miguel; Mira, António; Moreira, Francisco; Pita, Ricardo

Dispersal of organisms is a ubiquitous aspect of the natural world, with wide implications across scales and organization levels. Interest in dispersal has risen sharply over the past 30 years, mostly due to the multiple and rapid global changes ecosystems face. Among the various aspects that may characterize a dispersion event, dispersal distance is considered a key descriptor in a wide variety of studies acro...


Canopy arthropod declines along a gradient of olive farming intensification

Vasconcelos, Sasha; Pina, Sílvia; Herrera, José M; Silva, Bruno; Sousa, Pedro; Porto, Miguel; Melguizo-Ruiz, Nereida; Jiménez-Navarro, Gerardo

Arthropod declines have been linked to agricultural intensification. However, information about the impacts of intensification is still limited for many crops, as is our understanding of the responses of different arthropod taxa and trophic groups, thus hindering the development of effective mitigation measures. We investigated the impacts of olive farming intensification on canopy-dwelling arthropods in the Me...


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