Author(s):
Oliveira, Liliane Santana ; Patera, Andressa Caroline ; Domingues, Douglas Silva [UNESP] ; Sanches, Danilo Sipoli ; Lopes, Fabricio Martins ; Bugatti, Pedro Henrique ; Saito, Priscila Tiemi Maeda ; Maracaja-Coutinho, Vinicius ; Durham, Alan Mitchell ; Paschoal, Alexandre Rossi
Date: 2022
Persistent ID: http://hdl.handle.net/11449/221925
Origin: Oasisbr
Subject(s): Bioinformatics; CircRNAs; Circular RNA; Computational methods; Data analysis; Databases; Interaction; Mobile elements; Noncoding; Transposable elements; Bioinformatics; Bioinformatics; CircRNAs; CircRNAs; Circular RNA; Circular RNA; Computational methods; Computational methods; Data analysis; Data analysis; Databases; Databases; Interaction; Interaction; Mobile elements; Mobile elements; Noncoding; Noncoding; Transposable elements; Transposable elements
Description
Made available in DSpace on 2022-04-28T19:41:25Z (GMT). No. of bitstreams: 0 Previous issue date: 2021-01-01
This chapter provides two main contributions: (1) a description of computational tools and databases used to identify and analyze transposable elements (TEs) and circRNAs in plants; and (2) data analysis on public TE and circRNA data. Our goal is to highlight the primary information available in the literature on circular noncoding RNAs and transposable elements in plants. The exploratory analysis performed on publicly available circRNA and TEs data help discuss four sequence features. Finally, we investigate the association on circRNAs:TE in plants in the model organism Arabidopsis thaliana.
Department of Computer Science Federal University of Technology—Paraná (UTFPR)
Embrapa Soja
Group of Genomics and Transcriptomes in Plants Instituto de Biociências de Rio Claro Universidade Estadual Paulista (UNESP)
Centro de Modelamiento Molecular Biofísica y Bioinformática—CM2B2 Facultad de Ciencias Quimicas y Farmaceuticas Universidad de Chile
Department of Computer Science Instituto de Matemática e Estatística Universidade de São Paulo (USP)
Group of Genomics and Transcriptomes in Plants Instituto de Biociências de Rio Claro Universidade Estadual Paulista (UNESP)
