Publicação
Extracting clinical knowledge from electronic medical records
| Resumo: | As the adoption of Electronic Medical Records (EMRs) rises in the healthcare institutions, these resources’ importance increases due to all clinical information they contain about patients. However, the unstructured information in the form of clinical narratives present in these records makes it hard to extract and structure useful clinical knowledge. This unstructured information limits the potential of the EMRs because the clinical information these records contain can be used to perform essential tasks inside healthcare institutions such as searching, summarization, decision support and statistical analysis, as well as be used to support management decisions or serve for research. These tasks can only be done if the unstructured clinical information from the narratives is appropriately extracted, structured and processed in clinical knowledge. Usually, this information extraction and structuration in clinical knowledge is performed manually by healthcare practitioners, which is not efficient and is error-prone. This research aims to propose a solution to this problem, by using Machine Translation (MT) from the Portuguese language to the English language, Natural Language Processing (NLP) and Information Extraction (IE) techniques. With the help of these techniques, the goal is to develop a prototype pipeline modular system that can extract clinical knowledge from unstructured clinical information contained in Portuguese EMRs, in an automated way, in order to help EMRs to fulfil their potential and consequently help the Portuguese hospital involved in this research. This research also intends to show that this generic prototype system and approach can potentially be applied to other hospitals, even if they don’t use the Portuguese language. |
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| Autores principais: | Lamy, Manuel Maria Vilela Pestana de Moura |
| Assunto: | Information extraction Knowledge extraction Machine translation Natural language processing Text mining Engenharia informática Dados médicos Processamento da linguagem Processamento da informação |
| Ano: | 2018 |
| País: | Portugal |
| Tipo de documento: | dissertação de mestrado |
| Tipo de acesso: | acesso aberto |
| Instituição associada: | ISCTE |
| Idioma: | inglês |
| Origem: | Repositório ISCTE |
| Resumo: | As the adoption of Electronic Medical Records (EMRs) rises in the healthcare institutions, these resources’ importance increases due to all clinical information they contain about patients. However, the unstructured information in the form of clinical narratives present in these records makes it hard to extract and structure useful clinical knowledge. This unstructured information limits the potential of the EMRs because the clinical information these records contain can be used to perform essential tasks inside healthcare institutions such as searching, summarization, decision support and statistical analysis, as well as be used to support management decisions or serve for research. These tasks can only be done if the unstructured clinical information from the narratives is appropriately extracted, structured and processed in clinical knowledge. Usually, this information extraction and structuration in clinical knowledge is performed manually by healthcare practitioners, which is not efficient and is error-prone. This research aims to propose a solution to this problem, by using Machine Translation (MT) from the Portuguese language to the English language, Natural Language Processing (NLP) and Information Extraction (IE) techniques. With the help of these techniques, the goal is to develop a prototype pipeline modular system that can extract clinical knowledge from unstructured clinical information contained in Portuguese EMRs, in an automated way, in order to help EMRs to fulfil their potential and consequently help the Portuguese hospital involved in this research. This research also intends to show that this generic prototype system and approach can potentially be applied to other hospitals, even if they don’t use the Portuguese language. |
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