Publicação
Genetic and Morphological Variation of the Forkbeard, Phycis phycis (Pisces, Phycidae): Evidence of Panmixia and Recent Population Expansion along Its Distribution Area
| Resumo: | The knowledge of population structure of a species is essential to effectively assess and manage fisheries. In the present study, genetics, by mitochondrial DNA cytochrome b sequence analysis, and body geometric morphometrics were used to evaluate the existence of distinct populations of the forkbeard (Phycis phycis), an important commercial species in several European countries, especially Portugal and Spain. For geometric morphometric analysis, specimens were collected in the Northeast Atlantic Ocean-Azores, Madeira and mainland Portugal, and for genetic analysis, these samples were complemented with samples collected in the Mediterranean Sea-Spain, Italy and Croatia, in order to cover the entire distribution area of the species. Body shape of the forkbeard from the Northeast Atlantic was found to be highly variable. This variation was probably associated with different environmental factors between the study areas. Despite morphological variation, a low genetic differentiation between samples from different areas was found, most likely due to gene flow that occurred in the past or with the demographic history of the species. Moreover, the presence of unique haplotypes in the Northeast Atlantic and in the Mediterranean suggests that recent gene flow between populations from these areas should be limited. Altogether, a high haplotype diversity, a low nucleotide diversity, a "star-like" network and the results of the mismatch distribution, indicate a possible signature of recent population expansions, which probably started during the end of the Last Glacial Maximum and led to the colonization of the Northeast Atlantic and the Mediterranean. |
|---|---|
| Autores principais: | Vieira, Ana Rita |
| Outros Autores: | Rodrigues, Ana Sofia B.; Sequeira, Vera; Neves, Ana; Paiva, Rafaela Barros; Paulo, Octávio S.; Gordo, Leonel |
| Assunto: | Animals Atlantic Ocean Cytochromes c DNA, Mitochondrial Evolution, Molecular Fishes Genetics, Population Geography Haplotypes Mediterranean Sea Polymorphism, Genetic Population Dynamics Sequence Analysis, DNA Genetic Association Studies Genetic Variation |
| Ano: | 2016 |
| País: | Portugal |
| Tipo de documento: | artigo |
| Tipo de acesso: | acesso restrito |
| Instituição associada: | Universidade de Lisboa |
| Idioma: | inglês |
| Origem: | Repositório da Universidade de Lisboa |
| _version_ | 1866810329853329408 |
|---|---|
| author | Vieira, Ana Rita |
| author2 | Rodrigues, Ana Sofia B. Sequeira, Vera Neves, Ana Paiva, Rafaela Barros Paulo, Octávio S. Gordo, Leonel |
| author2_role | author author author author author author |
| author_facet | Vieira, Ana Rita Rodrigues, Ana Sofia B. Sequeira, Vera Neves, Ana Paiva, Rafaela Barros Paulo, Octávio S. Gordo, Leonel |
| author_role | author |
| contributor_name_str_mv | Repositório Científico de Acesso Aberto da ULisboa |
| country_str | PT |
| creators_json_txt | [{\"Person.name\":\"Vieira, Ana Rita\",\"Person.identifier.orcid\":\"0000-0002-5640-7999\"},{\"Person.name\":\"Rodrigues, Ana Sofia B.\"},{\"Person.name\":\"Sequeira, Vera\",\"Person.identifier.orcid\":\"0000-0001-7173-4982\"},{\"Person.name\":\"Neves, Ana\",\"Person.identifier.orcid\":\"0000-0003-3885-2738\"},{\"Person.name\":\"Paiva, Rafaela Barros\",\"Person.identifier.orcid\":\"0000-0002-7205-9373\"},{\"Person.name\":\"Paulo, Octávio S.\"},{\"Person.name\":\"Gordo, Leonel\",\"Person.identifier.orcid\":\"0000-0002-9144-6061\"}] |
| datacite.contributors.contributor.contributorName.fl_str_mv | Repositório Científico de Acesso Aberto da ULisboa |
| datacite.creators.creator.creatorName.fl_str_mv | Vieira, Ana Rita Rodrigues, Ana Sofia B. Sequeira, Vera Neves, Ana Paiva, Rafaela Barros Paulo, Octávio S. Gordo, Leonel |
| datacite.date.Accepted.fl_str_mv | 2016-01-01T00:00:00Z |
| datacite.date.available.fl_str_mv | 2019-06-25T12:26:53Z |
| datacite.date.embargoed.fl_str_mv | 2019-06-25T12:26:53Z |
| datacite.rights.fl_str_mv | http://purl.org/coar/access_right/c_16ec |
| datacite.subjects.subject.fl_str_mv | Animals Atlantic Ocean Cytochromes c DNA, Mitochondrial Evolution, Molecular Fishes Genetics, Population Geography Haplotypes Mediterranean Sea Polymorphism, Genetic Population Dynamics Sequence Analysis, DNA Genetic Association Studies Genetic Variation |
| datacite.titles.title.fl_str_mv | Genetic and Morphological Variation of the Forkbeard, Phycis phycis (Pisces, Phycidae): Evidence of Panmixia and Recent Population Expansion along Its Distribution Area |
| dc.contributor.none.fl_str_mv | Repositório Científico de Acesso Aberto da ULisboa |
| dc.creator.none.fl_str_mv | Vieira, Ana Rita Rodrigues, Ana Sofia B. Sequeira, Vera Neves, Ana Paiva, Rafaela Barros Paulo, Octávio S. Gordo, Leonel |
| dc.date.Accepted.fl_str_mv | 2016-01-01T00:00:00Z |
| dc.date.available.fl_str_mv | 2019-06-25T12:26:53Z |
| dc.date.embargoed.fl_str_mv | 2019-06-25T12:26:53Z |
| dc.format.none.fl_str_mv | application/pdf |
| dc.identifier.none.fl_str_mv | http://hdl.handle.net/10451/38852 |
| dc.language.none.fl_str_mv | eng |
| dc.rights.none.fl_str_mv | http://purl.org/coar/access_right/c_16ec |
| dc.subject.none.fl_str_mv | Animals Atlantic Ocean Cytochromes c DNA, Mitochondrial Evolution, Molecular Fishes Genetics, Population Geography Haplotypes Mediterranean Sea Polymorphism, Genetic Population Dynamics Sequence Analysis, DNA Genetic Association Studies Genetic Variation |
| dc.title.fl_str_mv | Genetic and Morphological Variation of the Forkbeard, Phycis phycis (Pisces, Phycidae): Evidence of Panmixia and Recent Population Expansion along Its Distribution Area |
| dc.type.none.fl_str_mv | http://purl.org/coar/resource_type/c_6501 |
| description | The knowledge of population structure of a species is essential to effectively assess and manage fisheries. In the present study, genetics, by mitochondrial DNA cytochrome b sequence analysis, and body geometric morphometrics were used to evaluate the existence of distinct populations of the forkbeard (Phycis phycis), an important commercial species in several European countries, especially Portugal and Spain. For geometric morphometric analysis, specimens were collected in the Northeast Atlantic Ocean-Azores, Madeira and mainland Portugal, and for genetic analysis, these samples were complemented with samples collected in the Mediterranean Sea-Spain, Italy and Croatia, in order to cover the entire distribution area of the species. Body shape of the forkbeard from the Northeast Atlantic was found to be highly variable. This variation was probably associated with different environmental factors between the study areas. Despite morphological variation, a low genetic differentiation between samples from different areas was found, most likely due to gene flow that occurred in the past or with the demographic history of the species. Moreover, the presence of unique haplotypes in the Northeast Atlantic and in the Mediterranean suggests that recent gene flow between populations from these areas should be limited. Altogether, a high haplotype diversity, a low nucleotide diversity, a "star-like" network and the results of the mismatch distribution, indicate a possible signature of recent population expansions, which probably started during the end of the Last Glacial Maximum and led to the colonization of the Northeast Atlantic and the Mediterranean. |
| dirty | 0 |
| eu_rights_str_mv | restrictedAccess |
| format | article |
| fulltext.url.fl_str_mv | https://repositorio.ulisboa.pt/bitstreams/d40c263f-36ea-45ff-8888-a8f9eb406a29/download |
| id | ul_2017b8b6ea42ecf28da7f069c4e79c67 |
| identifier.url.fl_str_mv | http://hdl.handle.net/10451/38852 |
| instacron_str | ul |
| institution | Universidade de Lisboa |
| instname_str | Universidade de Lisboa |
| language | eng |
| network_acronym_str | ul |
| network_name_str | Repositório da Universidade de Lisboa |
| oai_identifier_str | oai:repositorio.ulisboa.pt:10451/38852 |
| organization_str_mv | urn:organizationAcronym:ul |
| person_str_mv | Vieira, Ana Rita Vieira, Ana Rita https://www.ciencia-id.pt/5418-2378-F22F 5418-2378-F22F http://orcid.org/0000-0002-5640-7999 0000-0002-5640-7999 Rodrigues, Ana Sofia B. Sequeira, Vera Sequeira, Vera https://www.ciencia-id.pt/3515-0C30-9186 3515-0C30-9186 http://orcid.org/0000-0001-7173-4982 0000-0001-7173-4982 Neves, Ana Neves, Ana https://www.ciencia-id.pt/841A-6F45-B7F9 841A-6F45-B7F9 http://orcid.org/0000-0003-3885-2738 0000-0003-3885-2738 Paiva, Rafaela Barros Paiva, Rafaela Barros http://orcid.org/0000-0002-7205-9373 0000-0002-7205-9373 Paulo, Octávio S. Gordo, Leonel Gordo, Leonel http://orcid.org/0000-0002-9144-6061 0000-0002-9144-6061 |
| publishDate | 2016 |
| reponame_str | Repositório da Universidade de Lisboa |
| repository_id_str | urn:repositoryAcronym:ul |
| service_str_mv | urn:repositoryAcronym:ul |
| spelling | engpt_PTThe knowledge of population structure of a species is essential to effectively assess and manage fisheries. In the present study, genetics, by mitochondrial DNA cytochrome b sequence analysis, and body geometric morphometrics were used to evaluate the existence of distinct populations of the forkbeard (Phycis phycis), an important commercial species in several European countries, especially Portugal and Spain. For geometric morphometric analysis, specimens were collected in the Northeast Atlantic Ocean-Azores, Madeira and mainland Portugal, and for genetic analysis, these samples were complemented with samples collected in the Mediterranean Sea-Spain, Italy and Croatia, in order to cover the entire distribution area of the species. Body shape of the forkbeard from the Northeast Atlantic was found to be highly variable. This variation was probably associated with different environmental factors between the study areas. Despite morphological variation, a low genetic differentiation between samples from different areas was found, most likely due to gene flow that occurred in the past or with the demographic history of the species. Moreover, the presence of unique haplotypes in the Northeast Atlantic and in the Mediterranean suggests that recent gene flow between populations from these areas should be limited. Altogether, a high haplotype diversity, a low nucleotide diversity, a "star-like" network and the results of the mismatch distribution, indicate a possible signature of recent population expansions, which probably started during the end of the Last Glacial Maximum and led to the colonization of the Northeast Atlantic and the Mediterranean.application/pdfpt_PTGenetic and Morphological Variation of the Forkbeard, Phycis phycis (Pisces, Phycidae): Evidence of Panmixia and Recent Population Expansion along Its Distribution AreaPersonalVieira, Ana RitaDSpacehttp://dspace.org/items/ea21b366-fb02-44de-9d03-f358913c9ff0DSpacehttp://dspace.org/items/ea21b366-fb02-44de-9d03-f358913c9ff0VieiraAna RitaCiência IDhttps://www.ciencia-id.pt5418-2378-F22FORCIDhttp://orcid.org0000-0002-5640-7999Researcher IDhttps://www.researcherid.comB-1677-2012Scopus Author IDhttps://www.scopus.com26637827200Rodrigues, Ana Sofia B.PersonalSequeira, VeraDSpacehttp://dspace.org/items/d02f69b6-31c4-4391-92fb-9882a6e96e5eDSpacehttp://dspace.org/items/d02f69b6-31c4-4391-92fb-9882a6e96e5eSequeiraVeraCiência IDhttps://www.ciencia-id.pt3515-0C30-9186ORCIDhttp://orcid.org0000-0001-7173-4982Researcher IDhttps://www.researcherid.comB-1673-2012Scopus Author IDhttps://www.scopus.com24077692000PersonalNeves, AnaDSpacehttp://dspace.org/items/39c427d7-8ef7-4977-ac34-d4a21dcef450DSpacehttp://dspace.org/items/39c427d7-8ef7-4977-ac34-d4a21dcef450NevesAnaCiência IDhttps://www.ciencia-id.pt841A-6F45-B7F9ORCIDhttp://orcid.org0000-0003-3885-2738Researcher IDhttps://www.researcherid.comB-3611-2012Scopus Author IDhttps://www.scopus.com57203312308PersonalPaiva, Rafaela BarrosDSpacehttp://dspace.org/items/b03ee638-338b-4ab9-af21-c1c811cce45aDSpacehttp://dspace.org/items/b03ee638-338b-4ab9-af21-c1c811cce45aPaivaRafaela BarrosORCIDhttp://orcid.org0000-0002-7205-9373Researcher IDhttps://www.researcherid.comB-2828-2012Paulo, Octávio S.PersonalGordo, LeonelDSpacehttp://dspace.org/items/b34d7764-5cf9-4901-914b-26954d5059aeDSpacehttp://dspace.org/items/b34d7764-5cf9-4901-914b-26954d5059aeGordoLeonelORCIDhttp://orcid.org0000-0002-9144-6061Researcher IDhttps://www.researcherid.comB-3604-2012Scopus Author IDhttps://www.scopus.com6602175866HostingInstitutionOrganizationalRepositório Científico de Acesso Aberto da ULisboae-mailmailto:repositorio@reitoria.ulisboa.ptrepositorio@reitoria.ulisboa.ptISSNIsPartOf1932-6203DOIIsPartOf10.1371/journal.pone.01670452019-06-25T12:26:53Z20162016-01-01T00:00:00ZHandlehttp://hdl.handle.net/10451/38852http://purl.org/coar/access_right/c_16ecrestricted accessAnimalsAtlantic OceanCytochromes cDNA, MitochondrialEvolution, MolecularFishesGenetics, PopulationGeographyHaplotypesMediterranean SeaPolymorphism, GeneticPopulation DynamicsSequence Analysis, DNAGenetic Association StudiesGenetic Variation3061435 bytesliteraturehttp://purl.org/coar/resource_type/c_6501journal articlehttp://purl.org/coar/access_right/c_16ecapplication/pdffulltexthttps://repositorio.ulisboa.pt/bitstreams/d40c263f-36ea-45ff-8888-a8f9eb406a29/downloadPLoS ONE1112e0167045 |
| spellingShingle | Genetic and Morphological Variation of the Forkbeard, Phycis phycis (Pisces, Phycidae): Evidence of Panmixia and Recent Population Expansion along Its Distribution Area Vieira, Ana Rita Animals Atlantic Ocean Cytochromes c DNA, Mitochondrial Evolution, Molecular Fishes Genetics, Population Geography Haplotypes Mediterranean Sea Polymorphism, Genetic Population Dynamics Sequence Analysis, DNA Genetic Association Studies Genetic Variation |
| status | SINGLETON |
| subject.fl_str_mv | Animals Atlantic Ocean Cytochromes c DNA, Mitochondrial Evolution, Molecular Fishes Genetics, Population Geography Haplotypes Mediterranean Sea Polymorphism, Genetic Population Dynamics Sequence Analysis, DNA Genetic Association Studies Genetic Variation |
| title | Genetic and Morphological Variation of the Forkbeard, Phycis phycis (Pisces, Phycidae): Evidence of Panmixia and Recent Population Expansion along Its Distribution Area |
| title_full | Genetic and Morphological Variation of the Forkbeard, Phycis phycis (Pisces, Phycidae): Evidence of Panmixia and Recent Population Expansion along Its Distribution Area |
| title_fullStr | Genetic and Morphological Variation of the Forkbeard, Phycis phycis (Pisces, Phycidae): Evidence of Panmixia and Recent Population Expansion along Its Distribution Area |
| title_full_unstemmed | Genetic and Morphological Variation of the Forkbeard, Phycis phycis (Pisces, Phycidae): Evidence of Panmixia and Recent Population Expansion along Its Distribution Area |
| title_short | Genetic and Morphological Variation of the Forkbeard, Phycis phycis (Pisces, Phycidae): Evidence of Panmixia and Recent Population Expansion along Its Distribution Area |
| title_sort | Genetic and Morphological Variation of the Forkbeard, Phycis phycis (Pisces, Phycidae): Evidence of Panmixia and Recent Population Expansion along Its Distribution Area |
| topic | Animals Atlantic Ocean Cytochromes c DNA, Mitochondrial Evolution, Molecular Fishes Genetics, Population Geography Haplotypes Mediterranean Sea Polymorphism, Genetic Population Dynamics Sequence Analysis, DNA Genetic Association Studies Genetic Variation |
| topic_facet | Animals Atlantic Ocean Cytochromes c DNA, Mitochondrial Evolution, Molecular Fishes Genetics, Population Geography Haplotypes Mediterranean Sea Polymorphism, Genetic Population Dynamics Sequence Analysis, DNA Genetic Association Studies Genetic Variation |
| url | http://hdl.handle.net/10451/38852 |
| visible | 1 |