ViralFP: a web application of viral fusion proteins

• Author(s): Moreira, Pedro ; Sequeira, Ana ; Pereira, S. ; Rodrigues, Rúben André Costa ; Rocha, Miguel ; Lousa, Diana
• Date: 2021
• Persistent ID: https://hdl.handle.net/1822/73930
• Origin: RepositóriUM - Universidade do Minho
• Subject(s): Fusion proteins; Fusion peptides; Database; Web application; Machine learning
• Document Type: Journal article
• Language: English
• Contributor(s): Universidade do Minho

Description

Viral fusion proteins are attached to the membrane of enveloped viruses (a group that includes Coronaviruses, Dengue, HIV and Influenza) and catalyze fusion between the viral and host membranes, enabling the virus to insert its genetic material into the host cell. Given the importance of these biomolecules, this work presents a centralized database containing the most relevant information on viral fusion proteins, available through a free-to-use web server accessible through the URL https://viralfp.bio.di.uminho.pt/. This web application contains several bioinformatic tools, such as Clustal sequence alignment and Weblogo, including as well a machine learning-based tool capable of predicting the location of fusion peptides (the component of fusion proteins that inserts into the host's cell membrane) within the fusion protein sequence. Given the crucial role of these proteins in viral infection, their importance as natural targets of our immune system and their potential as therapeutic targets, this web application aims to foster our ability to fight pathogenic viruses.