Publicação
The genome sequence of the highly acetic acid-tolerant zygosaccharomyces bailii-derived interspecies hybrid strain ISA1307, isolated from a sparkling wine plant
| Resumo: | In this work, it is described the sequencing and annotation of the genome of the yeast strain ISA1307, isolated from a sparkling wine continuous production plant. This strain, formerly considered of the Zygosaccharomyces bailii species, has been used to study Z. bailii physiology, in particular, its extreme tolerance to acetic acid stress at low pH. The analysis of the genome sequence described in this work indicates that strain ISA1307 is an interspecies hybrid between Z. bailii and a closely related species. The genome sequence of ISA1307 is distributed through 154 scaffolds and has a size of around 21.2 Mb, corresponding to 96% of the genome size estimated by flow cytometry. Annotation of ISA1307 genome includes 4385 duplicated genes (~90% of the total number of predicted genes) and 1155 predicted single-copy genes. The functional categories including a higher number of genes are 'Metabolism and generation of energy', 'Protein folding, modification and targeting' and 'Biogenesis of cellular components'. The knowledge of the genome sequence of the ISA1307 strain is expected to contribute to accelerate systems-level understanding of stress resistance mechanisms in Z. bailii and to inspire and guide novel biotechnological applications of this yeast species/strain in fermentation processes, given its high resilience to acidic stress. The availability of the ISA1307 genome sequence also paves the way to a better understanding of the genetic mechanisms underlying the generation and selection of more robust hybrid yeast strains in the stressful environment of wine fermentations. |
|---|---|
| Autores principais: | Leão, Cecília |
| Outros Autores: | Rodrigues, Fernando José dos Santos; Santos, Júlia; Mira, Nuno P.; Münsterkötter, Martin; Valada, Filipa Dias; Palma, Margarida; Roque, Filipa C.; Guerreiro, Joana F.; Sousa, Maria João; Güldener, Ulrich; Correia, Isabel Sá |
| Assunto: | Zygosaccharomyces bailii Hybrid yeast strains Weak acid food preservatives tolerance Wine yeast strains Genome sequencing and annotation |
| Ano: | 2014 |
| País: | Portugal |
| Tipo de documento: | artigo |
| Tipo de acesso: | acesso aberto |
| Instituição associada: | Universidade do Minho |
| Idioma: | inglês |
| Origem: | RepositóriUM - Universidade do Minho |
| _version_ | 1866270921396846592 |
|---|---|
| author | Leão, Cecília |
| author2 | Rodrigues, Fernando José dos Santos Santos, Júlia Mira, Nuno P. Münsterkötter, Martin Valada, Filipa Dias Palma, Margarida Roque, Filipa C. Guerreiro, Joana F. Sousa, Maria João Güldener, Ulrich Correia, Isabel Sá |
| author2_role | author author author author author author author author author author author |
| author_facet | Leão, Cecília Rodrigues, Fernando José dos Santos Santos, Júlia Mira, Nuno P. Münsterkötter, Martin Valada, Filipa Dias Palma, Margarida Roque, Filipa C. Guerreiro, Joana F. Sousa, Maria João Güldener, Ulrich Correia, Isabel Sá |
| author_role | author |
| contributor_name_str_mv | Universidade do Minho |
| country_str | PT |
| creators_json_txt | [{\"Person.name\":\"Leão, Cecília\"},{\"Person.name\":\"Rodrigues, Fernando José dos Santos\"},{\"Person.name\":\"Santos, Júlia\"},{\"Person.name\":\"Mira, Nuno P.\"},{\"Person.name\":\"Münsterkötter, Martin\"},{\"Person.name\":\"Valada, Filipa Dias\"},{\"Person.name\":\"Palma, Margarida\"},{\"Person.name\":\"Roque, Filipa C.\"},{\"Person.name\":\"Guerreiro, Joana F.\"},{\"Person.name\":\"Sousa, Maria João\"},{\"Person.name\":\"Güldener, Ulrich\"},{\"Person.name\":\"Correia, Isabel Sá\"}] |
| datacite.contributors.contributor.contributorName.fl_str_mv | Universidade do Minho |
| datacite.creators.creator.creatorName.fl_str_mv | Leão, Cecília Rodrigues, Fernando José dos Santos Santos, Júlia Mira, Nuno P. Münsterkötter, Martin Valada, Filipa Dias Palma, Margarida Roque, Filipa C. Guerreiro, Joana F. Sousa, Maria João Güldener, Ulrich Correia, Isabel Sá |
| datacite.date.Accepted.fl_str_mv | 2014-01-01T00:00:00Z |
| datacite.date.available.fl_str_mv | 2014-05-29T11:17:23Z |
| datacite.date.embargoed.fl_str_mv | 2014-05-29T11:17:23Z |
| datacite.rights.fl_str_mv | http://purl.org/coar/access_right/c_abf2 |
| datacite.subjects.subject.fl_str_mv | Zygosaccharomyces bailii Hybrid yeast strains Weak acid food preservatives tolerance Wine yeast strains Genome sequencing and annotation |
| datacite.titles.title.fl_str_mv | The genome sequence of the highly acetic acid-tolerant zygosaccharomyces bailii-derived interspecies hybrid strain ISA1307, isolated from a sparkling wine plant |
| dc.contributor.none.fl_str_mv | Universidade do Minho |
| dc.creator.none.fl_str_mv | Leão, Cecília Rodrigues, Fernando José dos Santos Santos, Júlia Mira, Nuno P. Münsterkötter, Martin Valada, Filipa Dias Palma, Margarida Roque, Filipa C. Guerreiro, Joana F. Sousa, Maria João Güldener, Ulrich Correia, Isabel Sá |
| dc.date.Accepted.fl_str_mv | 2014-01-01T00:00:00Z |
| dc.date.available.fl_str_mv | 2014-05-29T11:17:23Z |
| dc.date.embargoed.fl_str_mv | 2014-05-29T11:17:23Z |
| dc.format.none.fl_str_mv | application/pdf |
| dc.identifier.none.fl_str_mv | https://hdl.handle.net/1822/29194 |
| dc.language.none.fl_str_mv | eng |
| dc.publisher.none.fl_str_mv | Oxford University Press |
| dc.rights.none.fl_str_mv | http://purl.org/coar/access_right/c_abf2 |
| dc.subject.none.fl_str_mv | Zygosaccharomyces bailii Hybrid yeast strains Weak acid food preservatives tolerance Wine yeast strains Genome sequencing and annotation |
| dc.title.fl_str_mv | The genome sequence of the highly acetic acid-tolerant zygosaccharomyces bailii-derived interspecies hybrid strain ISA1307, isolated from a sparkling wine plant |
| dc.type.none.fl_str_mv | http://purl.org/coar/resource_type/c_6501 |
| description | In this work, it is described the sequencing and annotation of the genome of the yeast strain ISA1307, isolated from a sparkling wine continuous production plant. This strain, formerly considered of the Zygosaccharomyces bailii species, has been used to study Z. bailii physiology, in particular, its extreme tolerance to acetic acid stress at low pH. The analysis of the genome sequence described in this work indicates that strain ISA1307 is an interspecies hybrid between Z. bailii and a closely related species. The genome sequence of ISA1307 is distributed through 154 scaffolds and has a size of around 21.2 Mb, corresponding to 96% of the genome size estimated by flow cytometry. Annotation of ISA1307 genome includes 4385 duplicated genes (~90% of the total number of predicted genes) and 1155 predicted single-copy genes. The functional categories including a higher number of genes are 'Metabolism and generation of energy', 'Protein folding, modification and targeting' and 'Biogenesis of cellular components'. The knowledge of the genome sequence of the ISA1307 strain is expected to contribute to accelerate systems-level understanding of stress resistance mechanisms in Z. bailii and to inspire and guide novel biotechnological applications of this yeast species/strain in fermentation processes, given its high resilience to acidic stress. The availability of the ISA1307 genome sequence also paves the way to a better understanding of the genetic mechanisms underlying the generation and selection of more robust hybrid yeast strains in the stressful environment of wine fermentations. |
| dirty | 0 |
| eu_rights_str_mv | openAccess |
| format | article |
| fulltext.url.fl_str_mv | https://prod-dspace.uminho.pt/bitstreams/26438335-7a50-480d-b833-3c41f69428f4/download |
| id | rum_fbde163066dbf53bc478832acdcfdbea |
| identifier.url.fl_str_mv | https://hdl.handle.net/1822/29194 |
| instacron_str | repositorium |
| institution | Universidade do Minho |
| instname_str | Universidade do Minho |
| language | eng |
| network_acronym_str | rum |
| network_name_str | RepositóriUM - Universidade do Minho |
| oai_identifier_str | oai:repositorium.uminho.pt:1822/29194 |
| organization_str_mv | urn:organizationAcronym:repositorium |
| person_str_mv | Leão, Cecília Rodrigues, Fernando José dos Santos Santos, Júlia Mira, Nuno P. Münsterkötter, Martin Valada, Filipa Dias Palma, Margarida Roque, Filipa C. Guerreiro, Joana F. Sousa, Maria João Güldener, Ulrich Correia, Isabel Sá |
| publishDate | 2014 |
| publisher.none.fl_str_mv | Oxford University Press |
| reponame_str | RepositóriUM - Universidade do Minho |
| repository_id_str | urn:repositoryAcronym:rum |
| service_str_mv | urn:repositoryAcronym:rum |
| spelling | engOxford University PressporIn this work, it is described the sequencing and annotation of the genome of the yeast strain ISA1307, isolated from a sparkling wine continuous production plant. This strain, formerly considered of the Zygosaccharomyces bailii species, has been used to study Z. bailii physiology, in particular, its extreme tolerance to acetic acid stress at low pH. The analysis of the genome sequence described in this work indicates that strain ISA1307 is an interspecies hybrid between Z. bailii and a closely related species. The genome sequence of ISA1307 is distributed through 154 scaffolds and has a size of around 21.2 Mb, corresponding to 96% of the genome size estimated by flow cytometry. Annotation of ISA1307 genome includes 4385 duplicated genes (~90% of the total number of predicted genes) and 1155 predicted single-copy genes. The functional categories including a higher number of genes are 'Metabolism and generation of energy', 'Protein folding, modification and targeting' and 'Biogenesis of cellular components'. The knowledge of the genome sequence of the ISA1307 strain is expected to contribute to accelerate systems-level understanding of stress resistance mechanisms in Z. bailii and to inspire and guide novel biotechnological applications of this yeast species/strain in fermentation processes, given its high resilience to acidic stress. The availability of the ISA1307 genome sequence also paves the way to a better understanding of the genetic mechanisms underlying the generation and selection of more robust hybrid yeast strains in the stressful environment of wine fermentations.application/pdfporThe genome sequence of the highly acetic acid-tolerant zygosaccharomyces bailii-derived interspecies hybrid strain ISA1307, isolated from a sparkling wine plantLeão, CecíliaRodrigues, Fernando José dos SantosSantos, JúliaMira, Nuno P.Münsterkötter, MartinValada, Filipa DiasPalma, MargaridaRoque, Filipa C.Guerreiro, Joana F.Sousa, Maria JoãoGüldener, UlrichCorreia, Isabel SáHostingInstitutionOrganizationalUniversidade do Minhoe-mailmailto:repositorium@usdb.uminho.ptrepositorium@usdb.uminho.ptISSNIsPartOf1756-1663DOIIsPartOf10.1093/dnares/dst0582014-05-29T11:17:23Z20142014-05-28T15:29:54Z2014-01-01T00:00:00ZHandlehttps://hdl.handle.net/1822/29194http://purl.org/coar/access_right/c_abf2open accessZygosaccharomyces bailiiHybrid yeast strainsWeak acid food preservatives toleranceWine yeast strainsGenome sequencing and annotation859790 bytesliteraturehttp://purl.org/coar/resource_type/c_6501journal articlehttp://purl.org/coar/access_right/c_abf2application/pdffulltexthttps://prod-dspace.uminho.pt/bitstreams/26438335-7a50-480d-b833-3c41f69428f4/download |
| spellingShingle | The genome sequence of the highly acetic acid-tolerant zygosaccharomyces bailii-derived interspecies hybrid strain ISA1307, isolated from a sparkling wine plant Leão, Cecília Zygosaccharomyces bailii Hybrid yeast strains Weak acid food preservatives tolerance Wine yeast strains Genome sequencing and annotation |
| status | SINGLETON |
| subject.fl_str_mv | Zygosaccharomyces bailii Hybrid yeast strains Weak acid food preservatives tolerance Wine yeast strains Genome sequencing and annotation |
| title | The genome sequence of the highly acetic acid-tolerant zygosaccharomyces bailii-derived interspecies hybrid strain ISA1307, isolated from a sparkling wine plant |
| title_full | The genome sequence of the highly acetic acid-tolerant zygosaccharomyces bailii-derived interspecies hybrid strain ISA1307, isolated from a sparkling wine plant |
| title_fullStr | The genome sequence of the highly acetic acid-tolerant zygosaccharomyces bailii-derived interspecies hybrid strain ISA1307, isolated from a sparkling wine plant |
| title_full_unstemmed | The genome sequence of the highly acetic acid-tolerant zygosaccharomyces bailii-derived interspecies hybrid strain ISA1307, isolated from a sparkling wine plant |
| title_short | The genome sequence of the highly acetic acid-tolerant zygosaccharomyces bailii-derived interspecies hybrid strain ISA1307, isolated from a sparkling wine plant |
| title_sort | The genome sequence of the highly acetic acid-tolerant zygosaccharomyces bailii-derived interspecies hybrid strain ISA1307, isolated from a sparkling wine plant |
| topic | Zygosaccharomyces bailii Hybrid yeast strains Weak acid food preservatives tolerance Wine yeast strains Genome sequencing and annotation |
| topic_facet | Zygosaccharomyces bailii Hybrid yeast strains Weak acid food preservatives tolerance Wine yeast strains Genome sequencing and annotation |
| url | https://hdl.handle.net/1822/29194 |
| visible | 1 |