Publicação
A haplotype-resolved draft genome of the European sardine (Sardina pilchardus)
| Resumo: | The European sardine (Sardina pilchardus Walbaum, 1792) is culturally and economically important throughout its distribution. Monitoring studies of sardine populations report an alarming decrease in stocks due to overfishing and environmental change, which has resulted in historically low captures along the Iberian Atlantic coast. Important biological and ecological features such as population diversity, structure, and migratory patterns can be addressed with the development and use of genomics resources. |
|---|---|
| Autores principais: | Louro, Bruno |
| Outros Autores: | De Moro, Gianluca; Garcia, Carlos; Cox, Cymon; Veríssimo, Ana; Sabatino, Stephen J.; Santos, António M.; Canario, A.V.M. |
| Assunto: | European sardine Sardina Genome Transcriptome Haplotype Single-nucleotide polymorphism |
| Ano: | 2019 |
| País: | Portugal |
| Tipo de documento: | artigo |
| Tipo de acesso: | acesso aberto |
| Instituição associada: | Universidade do Algarve |
| Idioma: | inglês |
| Origem: | Sapientia - Universidade do Algarve |
Registos relacionados
article “Out of the Can”: A Draft Genome Assembly, Liver Transcriptome, and Nutrigenomics of the European Sardine, Sardina pilchardus
por: Machado A.M.
Publicado em: (2018)
por: Machado A.M.
Publicado em: (2018)
article Effect of temperature on the daily increment deposition in the Otoliths of European sardine Sardina pilchardus (Walbaum, 1792) Larvae
por: Soares, Claudia
Publicado em: (2021)
por: Soares, Claudia
Publicado em: (2021)
table_chart Sardine validation temperatures - data supporting results published in "Effect of temperature on the daily increment deposition in the Otoliths of European Sardine Sardina Pilchardus (Walbaum, 1792) Larvae". Oceans
por: Soares, Claúdia
Publicado em: (2021)
por: Soares, Claúdia
Publicado em: (2021)
school Trophic ecology of the atlanto-iberian sardine (Sardina pilchardus)
por: Coelho, Carla Susana Ferreira Garrido
Publicado em: (2007)
por: Coelho, Carla Susana Ferreira Garrido
Publicado em: (2007)
school Sardine (Sardina pilchardus) delayed mortality associated with purse seine slipping: contributing stressors and responses
por: Marçalo, Ana Luísa Barreto
Publicado em: (2009)
por: Marçalo, Ana Luísa Barreto
Publicado em: (2009)
school Análise dos Circuitos de Processamento e Congelação de Miolo de Gamba-rosa (Haliporoides triarthrus) e de Filetes de Sardinha (Sardina pilchardus)
por: Muzavuila, Geovania Paulina Coimbra
Publicado em: (2024)
por: Muzavuila, Geovania Paulina Coimbra
Publicado em: (2024)
article Forward genetics in Wolbachia: regulation of Wolbachia proliferation by the amplification and deletion of an addictive genomic island
por: Duarte, Elves H.
Publicado em: (2021)
por: Duarte, Elves H.
Publicado em: (2021)
article Diet and feeding intensity of sardine Sardina pilchardus: correlation with satellite-derived chlorophyll data
por: Garrido, Susana
Publicado em: (2008)
por: Garrido, Susana
Publicado em: (2008)
article Runs of homozygosity provide a genome landscape picture of inbreeding and genetic history of European autochthonous and commercial pig breeds
por: Schiavo, G.
Publicado em: (2021)
por: Schiavo, G.
Publicado em: (2021)
article Sardine (Sardina pilchardus) larval dispersal in the Iberian upwelling system, using coupled biophysical techniques
por: Santos, A.M.P.
Publicado em: (2018)
por: Santos, A.M.P.
Publicado em: (2018)
article Genomic tools for the conservation and genetic improvement of a highly fragmented breed : the ramo grande cattle from the Azores
por: Amaral, A J
Publicado em: (2020)
por: Amaral, A J
Publicado em: (2020)
article Ontogeny of swimming behaviour in sardine Sardina pilchardus larvae and effect of larval nutritional condition on critical speed
por: Silva, L.
Publicado em: (2014)
por: Silva, L.
Publicado em: (2014)
school Comparative feeding behaviour of early larvae of sardine Sardina pilchardus (Walbaum, 1792) and anchovy Engraulis encrasicolus (Linnaeus, 1758)
por: Ramalho, Maria Luísa Pinto Ferreira Palma, 1990-
Publicado em: (2015)
por: Ramalho, Maria Luísa Pinto Ferreira Palma, 1990-
Publicado em: (2015)
article Effect of temperature on the growth, survival, development and foraging behaviour of Sardina pilchardus larvae
por: Garrido, Susana
Publicado em: (2016)
por: Garrido, Susana
Publicado em: (2016)
article Immunotherapy of aspergillosis
por: Carvalho, Agostinho
Publicado em: (2012)
por: Carvalho, Agostinho
Publicado em: (2012)
article Does the nutritional condition limit survival potential of sardine Sardina pilchardus (Walbaum, 1792) larvae off the north coast of Spain? RNA/DNA ratios and their variability
por: Chicharo, Maria Alexandra
Publicado em: (1998)
por: Chicharo, Maria Alexandra
Publicado em: (1998)
article Whole genome SNP-associated signatures of local adaptation in honeybees of the Iberian Peninsula
por: Henriques, Dora
Publicado em: (2018)
por: Henriques, Dora
Publicado em: (2018)
article PTX3 polymorphisms influence cytomegalovirus reactivation after stem-cell transplantation
por: Campos, Cláudia F.
Publicado em: (2019)
por: Campos, Cláudia F.
Publicado em: (2019)
article Unravelling the genetic basis of schizophrenia and bipolar disorder with GWAS: a systematic review
por: Prata, Diana
Publicado em: (2019)
por: Prata, Diana
Publicado em: (2019)
article Starvation percentages in field caught Sardina pilchardus larvae off southern Portugal
por: Teodosio, Maria
Publicado em: (1997)
por: Teodosio, Maria
Publicado em: (1997)
article Sardine regime shifts off Portugal : a time series analysis of catches and wind conditions
por: Crato, Nuno
Publicado em: (2003)
por: Crato, Nuno
Publicado em: (2003)
article Energy content of anchovy and sardine using surrogate calorimetry methods
por: Campanini, Claudia
Publicado em: (2021)
por: Campanini, Claudia
Publicado em: (2021)
article IL23R polymorphisms influence phenotype and response to therapy in patients with ulcerative colitis
por: Cravo, Marília
Publicado em: (2014)
por: Cravo, Marília
Publicado em: (2014)
article The unexpected occurrence of late Sardina pilchardus (Walbaum, 1792) (Osteichthyes: Clupeidae) larvae in a temperate estuary
por: Morais, P.
Publicado em: (2009)
por: Morais, P.
Publicado em: (2009)
article Generation of SNP datasets for orangutan population genomics using improved reduced-representation sequencing and direct comparisons of SNP calling algorithms
por: Greminger, Maja P
Publicado em: (2014)
por: Greminger, Maja P
Publicado em: (2014)
article Magnitude and distribution of linkage disequilibrium in population isolates and implications for genome-wide association studies
por: Service, Susan
Publicado em: (2006)
por: Service, Susan
Publicado em: (2006)
article Nutritional condition and starvation in Sardina pilchardus (L.) larvae off southern Portugal compared with some environmental factors
por: Chicharo, Maria Alexandra Teodosio
Publicado em: (1998)
por: Chicharo, Maria Alexandra Teodosio
Publicado em: (1998)
school Assembly and annotation of the sardine (Sardina pilchardus) transcriptome
por: Garcia, Carlos Miguel Estevens Vieira Rolo
Publicado em: (2019)
por: Garcia, Carlos Miguel Estevens Vieira Rolo
Publicado em: (2019)
school Crescimento diário de juvenis de sardinha, Sardina pilchardus (Walbaum, 1792): relação com actividade reprodutiva e condições ambientais
por: Silva, Andreia Vanessa Alves da, 1983
Publicado em: (2011)
por: Silva, Andreia Vanessa Alves da, 1983
Publicado em: (2011)
article Y-chromosome lineages in Cabo Verde Islands witness the diverse geographic origin of its first male settlers
por: Gonçalves, Rita
Publicado em: (2003)
por: Gonçalves, Rita
Publicado em: (2003)
school Development of a cost-effective SNP tool to detect genetic pollution in honey bee spermatheca content
por: Soltani, Chiraz
Publicado em: (2023)
por: Soltani, Chiraz
Publicado em: (2023)
school Modelação do crescimento de Sardina pilchardus (Walbaum, 1792) em duas zonas (oceanograficamente distintas) da costa portuguesa
por: Coelho, Paula Cristina Tapadas
Publicado em: (2009)
por: Coelho, Paula Cristina Tapadas
Publicado em: (2009)
article Modelling the spatial distribution of Sardina pilchardus and Engraulis encrasicolus spawning habitat in the NW Mediterranean Sea
por: Gordó-Vilaseca, Cesc
Publicado em: (2021)
por: Gordó-Vilaseca, Cesc
Publicado em: (2021)
article Estimation of starvation and diet variation of the RNA/DNA ratios in field-caught Sardina pilchardus larvae off the north of Spain
por: Chicharo, Alexandra
Publicado em: (1998)
por: Chicharo, Alexandra
Publicado em: (1998)
article Contraction of fully expanded FMR1 alleles to the normal range: predisposing haplotype or rare events?
por: Maia, N
Publicado em: (2017)
por: Maia, N
Publicado em: (2017)
article Complex population structure and haplotype patterns in the Western European honey bee from sequencing a large panel of haploid drones
por: Wragg, David
Publicado em: (2022)
por: Wragg, David
Publicado em: (2022)
article Assessing genotype-phenotype associations in three dorsal colour morphs in the meadow spittlebug Philaenus spumarius (L.) (Hemiptera: Aphrophoridae) using genomic and transcriptomic resources
por: Rodrigues, Ana S. B.
Publicado em: (2016)
por: Rodrigues, Ana S. B.
Publicado em: (2016)
article Assessing genotype-phenotype associations in three dorsal colour morphs in the meadow spittlebug Philaenus spumarius (L.) (Hemiptera: Aphrophoridae) using genomic and transcriptomic resources
por: Rodrigues, Ana S. B.
Publicado em: (2016)
por: Rodrigues, Ana S. B.
Publicado em: (2016)
article Two Different High Throughput Sequencing Approaches Identify Thousands of De Novo Genomic Markers for the Genetically Depleted Bornean Elephant
por: Sharma, Reeta
Publicado em: (2012)
por: Sharma, Reeta
Publicado em: (2012)
article Gene-associated markers as a genomic and transcriptomic resource for a highly migratory and apex predator shark (Isurus oxyrinchus)
por: Domingues, Rodrigo R.
Publicado em: (2022)
por: Domingues, Rodrigo R.
Publicado em: (2022)
Registos relacionados
-
article “Out of the Can”: A Draft Genome Assembly, Liver Transcriptome, and Nutrigenomics of the European Sardine, Sardina pilchardus
por: Machado A.M.
Publicado em: (2018) -
article Effect of temperature on the daily increment deposition in the Otoliths of European sardine Sardina pilchardus (Walbaum, 1792) Larvae
por: Soares, Claudia
Publicado em: (2021) -
table_chart Sardine validation temperatures - data supporting results published in "Effect of temperature on the daily increment deposition in the Otoliths of European Sardine Sardina Pilchardus (Walbaum, 1792) Larvae". Oceans
por: Soares, Claúdia
Publicado em: (2021) -
school Trophic ecology of the atlanto-iberian sardine (Sardina pilchardus)
por: Coelho, Carla Susana Ferreira Garrido
Publicado em: (2007) -
school Sardine (Sardina pilchardus) delayed mortality associated with purse seine slipping: contributing stressors and responses
por: Marçalo, Ana Luísa Barreto
Publicado em: (2009)