Author(s): Sousa, Ana Margarida ; Pereira, Maria Olívia ; Azevedo, N. F. ; Lourenço, Anália
Date: 2014
Persistent ID: http://hdl.handle.net/1822/31726
Origin: RepositóriUM - Universidade do Minho
Project/scholarship: info:eu-repo/grantAgreement/FCT/3599-PPCDT/132966/PT; info:eu-repo/grantAgreement/FCT/5876-PPCDTI/113196/PT ; info:eu-repo/grantAgreement/FCT/SFRH/SFRH%2FBD%2F72551%2F2010/PT; info:eu-repo/grantAgreement/EC/FP7/316265/EU;
Subject(s): Science & Technology
Biofilm studies are at the crossroads of Biology, Chemistry, Medicine, Material Science and Engineering, among other fields. Data harmonisation in Biofilms is therefore crucial to allow for researchers to collaborate, interchange, understand, and replicate studies at an inter-laboratory and inter-domain scale. The international Minimum Information About a Biofilms Experiment initiative has prepared a set of guidelines for documenting biofilms experiments and data, namely the minimum information checklist. This paper goes a step forward and describes a new ontology for the broad description of biofilm experiments and data. In such an interdisciplinary context we chose to rely on a common integration framework provided by a foundational ontology that facilitates the addition and extension of various sub-domain modules, and the consistent integration of terminology extracted from several existing ontologies, e.g. EXPO and ChEBI. The community is participating actively in the production of this resource, and it is already used by public biofilms-centred databases, such as BiofOmics, and bioinformatics tools, such as the Biofilms Experiment Workbench. This practical validation serves the purpose of disseminating the controlled vocabulary among researchers and identifying current limitations, glitches, and inconsistencies. Information branches will be added, extended or refactored according to user feedback and group discussions.
The financial support from IBB-CEB, Fundação para a Ciência e Tecnologia (FCT), European Community fund FEDER, trough Program COMPETE, in the ambit of the projects PEstOE/EQB/LA0023/2013 and PTDC/SAUSAP/113196/2009/FCOMP-01-0124-FEDER-016012 and Ana Margarida Sousa PhD Grant (SFRH/BD/72551/2010), European Union Seventh Framework Programme [FP7/REGPOT-2012-2013.1] [grant number 316265], BIOCAPS and the Agrupamento INBIOMED from DXPCTSUG-FEDER unha maneira de facer Europa (2012/273) are gratefully acknowledged.
